Experiment: marine broth 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3818 and Dshi_3819 overlap by 4 nucleotides Dshi_3819 and Dshi_3820 overlap by 1 nucleotides Dshi_3820 and Dshi_3821 are separated by 1 nucleotides Dshi_3821 and Dshi_3822 are separated by 12 nucleotides
Dshi_3818: Dshi_3818 - phenylacetate-CoA oxygenase, PaaG subunit (RefSeq), at 26,236 to 27,213
_3818
Dshi_3819: Dshi_3819 - phenylacetate-CoA oxygenase, PaaH subunit (RefSeq), at 27,210 to 27,542
_3819
Dshi_3820: Dshi_3820 - phenylacetate-CoA oxygenase, PaaI subunit (RefSeq), at 27,542 to 28,309
_3820
Dshi_3821: Dshi_3821 - phenylacetate-CoA oxygenase, PaaJ subunit (RefSeq), at 28,311 to 28,769
_3821
Dshi_3822: Dshi_3822 - phenylacetate-CoA oxygenase/reductase, PaaK subunit (RefSeq), at 28,782 to 29,852
_3822
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1
2 at 26.561 kb on + strand, within Dshi_3818 at 26.611 kb on + strand, within Dshi_3818 at 26.619 kb on - strand, within Dshi_3818 at 26.649 kb on + strand, within Dshi_3818 at 26.722 kb on + strand, within Dshi_3818 at 26.770 kb on - strand, within Dshi_3818 at 26.823 kb on - strand, within Dshi_3818 at 26.874 kb on - strand, within Dshi_3818 at 26.880 kb on - strand, within Dshi_3818 at 26.956 kb on + strand, within Dshi_3818 at 26.963 kb on + strand, within Dshi_3818 at 26.997 kb on + strand, within Dshi_3818 at 27.370 kb on + strand, within Dshi_3819 at 27.598 kb on - strand at 27.600 kb on + strand at 27.670 kb on + strand, within Dshi_3820 at 27.678 kb on - strand, within Dshi_3820 at 27.731 kb on + strand, within Dshi_3820 at 27.737 kb on + strand, within Dshi_3820 at 27.814 kb on + strand, within Dshi_3820 at 27.892 kb on + strand, within Dshi_3820 at 27.955 kb on - strand, within Dshi_3820 at 27.966 kb on - strand, within Dshi_3820 at 28.055 kb on - strand, within Dshi_3820 at 28.163 kb on + strand, within Dshi_3820 at 28.213 kb on - strand, within Dshi_3820 at 28.318 kb on - strand at 28.501 kb on - strand, within Dshi_3821 at 28.513 kb on + strand, within Dshi_3821 at 28.701 kb on + strand, within Dshi_3821 at 28.743 kb on - strand at 28.845 kb on - strand at 28.934 kb on + strand, within Dshi_3822 at 28.939 kb on + strand, within Dshi_3822 at 29.005 kb on - strand, within Dshi_3822 at 29.031 kb on - strand, within Dshi_3822 at 29.088 kb on - strand, within Dshi_3822 at 29.091 kb on + strand, within Dshi_3822 at 29.171 kb on - strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.236 kb on + strand, within Dshi_3822
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 25C remove 26,561 + Dshi_3818 0.33 -0.1 26,611 + Dshi_3818 0.38 -0.3 26,619 - Dshi_3818 0.39 -0.4 26,649 + Dshi_3818 0.42 -0.9 26,722 + Dshi_3818 0.50 -0.1 26,770 - Dshi_3818 0.55 +0.2 26,823 - Dshi_3818 0.60 +0.2 26,874 - Dshi_3818 0.65 +0.5 26,880 - Dshi_3818 0.66 -0.0 26,956 + Dshi_3818 0.74 +0.5 26,963 + Dshi_3818 0.74 +0.1 26,997 + Dshi_3818 0.78 +0.2 27,370 + Dshi_3819 0.48 +0.6 27,598 - +0.2 27,600 + -0.5 27,670 + Dshi_3820 0.17 -0.1 27,678 - Dshi_3820 0.18 -0.0 27,731 + Dshi_3820 0.25 -0.6 27,737 + Dshi_3820 0.25 +0.2 27,814 + Dshi_3820 0.35 -0.5 27,892 + Dshi_3820 0.46 +0.2 27,955 - Dshi_3820 0.54 -0.4 27,966 - Dshi_3820 0.55 +0.1 28,055 - Dshi_3820 0.67 -0.2 28,163 + Dshi_3820 0.81 -0.4 28,213 - Dshi_3820 0.87 -0.2 28,318 - -0.8 28,501 - Dshi_3821 0.41 -0.9 28,513 + Dshi_3821 0.44 -1.6 28,701 + Dshi_3821 0.85 -0.2 28,743 - -0.4 28,845 - +2.0 28,934 + Dshi_3822 0.14 -0.3 28,939 + Dshi_3822 0.15 +0.0 29,005 - Dshi_3822 0.21 +0.2 29,031 - Dshi_3822 0.23 +0.3 29,088 - Dshi_3822 0.29 -0.7 29,091 + Dshi_3822 0.29 -0.6 29,171 - Dshi_3822 0.36 -0.6 29,210 + Dshi_3822 0.40 +1.7 29,210 + Dshi_3822 0.40 +0.5 29,218 - Dshi_3822 0.41 +2.3 29,218 - Dshi_3822 0.41 +0.9 29,236 + Dshi_3822 0.42 +1.0
Or see this region's nucleotide sequence