Experiment: marine broth 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0650 and Dshi_0651 are separated by 330 nucleotides Dshi_0651 and Dshi_0652 are separated by 20 nucleotides Dshi_0652 and Dshi_0653 are separated by 45 nucleotides
Dshi_0650: Dshi_0650 - DNA polymerase III, subunits gamma and tau (RefSeq), at 651,643 to 653,406
_0650
Dshi_0651: Dshi_0651 - NUDIX hydrolase (RefSeq), at 653,737 to 654,693
_0651
Dshi_0652: Dshi_0652 - hypothetical protein (RefSeq), at 654,714 to 655,202
_0652
Dshi_0653: Dshi_0653 - Prephenate dehydratase (RefSeq), at 655,248 to 656,090
_0653
Position (kb) 653
654
655 Strain fitness (log2 ratio) -1
0
1 at 653.510 kb on + strand at 653.653 kb on + strand at 653.661 kb on - strand at 653.700 kb on + strand at 653.726 kb on + strand at 653.733 kb on + strand at 653.741 kb on + strand at 653.741 kb on - strand at 653.966 kb on + strand, within Dshi_0651 at 653.984 kb on + strand, within Dshi_0651 at 654.047 kb on + strand, within Dshi_0651 at 654.114 kb on - strand, within Dshi_0651 at 654.125 kb on + strand, within Dshi_0651 at 654.159 kb on + strand, within Dshi_0651 at 654.166 kb on + strand, within Dshi_0651 at 654.407 kb on - strand, within Dshi_0651 at 654.409 kb on + strand, within Dshi_0651 at 654.528 kb on - strand, within Dshi_0651 at 654.539 kb on + strand, within Dshi_0651 at 654.776 kb on - strand, within Dshi_0652 at 654.840 kb on + strand, within Dshi_0652 at 654.944 kb on + strand, within Dshi_0652 at 655.036 kb on + strand, within Dshi_0652 at 655.044 kb on - strand, within Dshi_0652 at 655.063 kb on + strand, within Dshi_0652 at 655.158 kb on - strand at 655.651 kb on - strand, within Dshi_0653
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 25C remove 653,510 + -1.2 653,653 + -0.0 653,661 - -0.7 653,700 + -0.0 653,726 + -0.3 653,733 + +0.2 653,741 + +0.3 653,741 - -0.2 653,966 + Dshi_0651 0.24 -0.7 653,984 + Dshi_0651 0.26 -0.1 654,047 + Dshi_0651 0.32 -0.5 654,114 - Dshi_0651 0.39 +0.4 654,125 + Dshi_0651 0.41 -0.5 654,159 + Dshi_0651 0.44 -1.7 654,166 + Dshi_0651 0.45 +0.4 654,407 - Dshi_0651 0.70 -0.3 654,409 + Dshi_0651 0.70 -0.6 654,528 - Dshi_0651 0.83 -0.0 654,539 + Dshi_0651 0.84 -0.3 654,776 - Dshi_0652 0.13 -0.0 654,840 + Dshi_0652 0.26 -0.2 654,944 + Dshi_0652 0.47 -0.0 655,036 + Dshi_0652 0.66 -0.8 655,044 - Dshi_0652 0.67 -0.4 655,063 + Dshi_0652 0.71 -0.3 655,158 - -0.0 655,651 - Dshi_0653 0.48 +0.2
Or see this region's nucleotide sequence