Experiment: marine broth 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0643 and Dshi_0644 are separated by 293 nucleotides Dshi_0644 and Dshi_0645 are separated by 99 nucleotides
Dshi_0643: Dshi_0643 - short-chain dehydrogenase/reductase SDR (RefSeq), at 641,326 to 642,117
_0643
Dshi_0644: Dshi_0644 - excinuclease ABC, C subunit (RefSeq), at 642,411 to 644,306
_0644
Dshi_0645: Dshi_0645 - TRAP transporter solute receptor, TAXI family (RefSeq), at 644,406 to 645,413
_0645
Position (kb) 642
643
644
645 Strain fitness (log2 ratio) -1
0
1 at 642.107 kb on + strand at 642.164 kb on + strand at 642.170 kb on - strand at 642.344 kb on - strand at 642.369 kb on + strand at 642.389 kb on + strand at 642.630 kb on + strand, within Dshi_0644 at 642.720 kb on - strand, within Dshi_0644 at 642.722 kb on + strand, within Dshi_0644 at 642.915 kb on + strand, within Dshi_0644 at 642.993 kb on - strand, within Dshi_0644 at 643.077 kb on - strand, within Dshi_0644 at 643.108 kb on + strand, within Dshi_0644 at 643.200 kb on - strand, within Dshi_0644 at 643.368 kb on - strand, within Dshi_0644 at 643.378 kb on - strand, within Dshi_0644 at 643.657 kb on + strand, within Dshi_0644 at 643.657 kb on + strand, within Dshi_0644 at 643.756 kb on + strand, within Dshi_0644 at 643.963 kb on - strand, within Dshi_0644 at 644.020 kb on - strand, within Dshi_0644 at 644.178 kb on + strand at 644.375 kb on + strand at 644.377 kb on + strand at 644.420 kb on - strand at 644.425 kb on - strand at 644.458 kb on - strand at 644.552 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.571 kb on - strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.856 kb on + strand, within Dshi_0645 at 644.964 kb on - strand, within Dshi_0645 at 645.068 kb on + strand, within Dshi_0645 at 645.106 kb on - strand, within Dshi_0645 at 645.170 kb on + strand, within Dshi_0645 at 645.208 kb on + strand, within Dshi_0645
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 25C remove 642,107 + +0.3 642,164 + -0.3 642,170 - -0.4 642,344 - -0.3 642,369 + +0.4 642,389 + -0.7 642,630 + Dshi_0644 0.12 -1.6 642,720 - Dshi_0644 0.16 -0.2 642,722 + Dshi_0644 0.16 -0.3 642,915 + Dshi_0644 0.27 -0.0 642,993 - Dshi_0644 0.31 +0.2 643,077 - Dshi_0644 0.35 -0.7 643,108 + Dshi_0644 0.37 -1.1 643,200 - Dshi_0644 0.42 -0.3 643,368 - Dshi_0644 0.50 -0.3 643,378 - Dshi_0644 0.51 -0.8 643,657 + Dshi_0644 0.66 -0.7 643,657 + Dshi_0644 0.66 -0.0 643,756 + Dshi_0644 0.71 -0.3 643,963 - Dshi_0644 0.82 -0.9 644,020 - Dshi_0644 0.85 -0.4 644,178 + -0.9 644,375 + +0.1 644,377 + +0.5 644,420 - +0.5 644,425 - -1.1 644,458 - -1.0 644,552 + Dshi_0645 0.14 +0.4 644,563 + Dshi_0645 0.16 -0.7 644,563 + Dshi_0645 0.16 -0.3 644,571 - Dshi_0645 0.16 +1.4 644,654 + Dshi_0645 0.25 -0.1 644,654 + Dshi_0645 0.25 -0.0 644,856 + Dshi_0645 0.45 +0.5 644,964 - Dshi_0645 0.55 -0.7 645,068 + Dshi_0645 0.66 -0.3 645,106 - Dshi_0645 0.69 +0.3 645,170 + Dshi_0645 0.76 +0.2 645,208 + Dshi_0645 0.80 -0.2
Or see this region's nucleotide sequence