Experiment: MoLS4 with L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0543 and DVU0544 are separated by 22 nucleotides DVU0544 and DVU0545 overlap by 1 nucleotides DVU0545 and DVU0547 are separated by 448 nucleotides
DVU0543: DVU0543 - conserved hypothetical protein (TIGR), at 614,589 to 615,698
DVU0543
DVU0544: DVU0544 - hypothetical protein (TIGR), at 615,721 to 616,122
DVU0544
DVU0545: DVU0545 - conserved hypothetical protein (TIGR), at 616,122 to 616,547
DVU0545
DVU0547: DVU0547 - high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein (TIGR), at 616,996 to 618,114
DVU0547
Position (kb) 616
617 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 615.127 kb on + strand, within DVU0543 at 615.278 kb on + strand, within DVU0543 at 615.362 kb on + strand, within DVU0543 at 615.443 kb on - strand, within DVU0543 at 615.484 kb on + strand, within DVU0543 at 615.484 kb on + strand, within DVU0543 at 615.484 kb on + strand, within DVU0543 at 615.494 kb on + strand, within DVU0543 at 615.517 kb on - strand, within DVU0543 at 615.530 kb on - strand, within DVU0543 at 615.546 kb on + strand, within DVU0543 at 615.576 kb on - strand, within DVU0543 at 615.592 kb on - strand at 615.704 kb on + strand at 615.756 kb on + strand at 615.756 kb on + strand at 615.759 kb on - strand at 615.762 kb on - strand, within DVU0544 at 615.764 kb on - strand, within DVU0544 at 615.764 kb on - strand, within DVU0544 at 615.807 kb on + strand, within DVU0544 at 615.808 kb on + strand, within DVU0544 at 615.808 kb on + strand, within DVU0544 at 615.865 kb on + strand, within DVU0544 at 615.932 kb on - strand, within DVU0544 at 616.017 kb on + strand, within DVU0544 at 616.086 kb on + strand at 616.133 kb on - strand at 616.178 kb on - strand, within DVU0545 at 616.193 kb on - strand, within DVU0545 at 616.258 kb on + strand, within DVU0545 at 616.343 kb on + strand, within DVU0545 at 616.353 kb on - strand, within DVU0545 at 616.374 kb on + strand, within DVU0545 at 616.388 kb on - strand, within DVU0545 at 616.471 kb on + strand, within DVU0545 at 616.471 kb on + strand, within DVU0545 at 616.479 kb on - strand, within DVU0545 at 616.492 kb on - strand, within DVU0545 at 616.515 kb on + strand at 616.548 kb on + strand at 616.554 kb on - strand at 616.652 kb on - strand at 616.696 kb on - strand at 616.698 kb on + strand at 616.719 kb on - strand at 616.900 kb on + strand at 617.009 kb on + strand at 617.052 kb on - strand at 617.053 kb on + strand at 617.085 kb on + strand at 617.113 kb on - strand, within DVU0547 at 617.120 kb on + strand, within DVU0547 at 617.125 kb on + strand, within DVU0547 at 617.174 kb on - strand, within DVU0547 at 617.226 kb on + strand, within DVU0547 at 617.234 kb on - strand, within DVU0547 at 617.301 kb on - strand, within DVU0547 at 617.313 kb on + strand, within DVU0547 at 617.386 kb on - strand, within DVU0547 at 617.405 kb on + strand, within DVU0547 at 617.529 kb on + strand, within DVU0547 at 617.537 kb on - strand, within DVU0547
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Proline (N) remove 615,127 + DVU0543 0.48 -0.2 615,278 + DVU0543 0.62 -0.2 615,362 + DVU0543 0.70 -0.9 615,443 - DVU0543 0.77 -0.2 615,484 + DVU0543 0.81 +0.0 615,484 + DVU0543 0.81 +0.2 615,484 + DVU0543 0.81 -2.4 615,494 + DVU0543 0.82 -0.2 615,517 - DVU0543 0.84 +0.0 615,530 - DVU0543 0.85 -1.5 615,546 + DVU0543 0.86 -0.1 615,576 - DVU0543 0.89 +2.2 615,592 - -0.3 615,704 + +1.0 615,756 + -1.4 615,756 + -1.7 615,759 - -0.5 615,762 - DVU0544 0.10 +0.2 615,764 - DVU0544 0.11 -0.4 615,764 - DVU0544 0.11 -0.1 615,807 + DVU0544 0.21 +0.2 615,808 + DVU0544 0.22 -0.4 615,808 + DVU0544 0.22 -0.3 615,865 + DVU0544 0.36 +0.0 615,932 - DVU0544 0.52 +0.0 616,017 + DVU0544 0.74 +0.2 616,086 + +1.0 616,133 - +0.0 616,178 - DVU0545 0.13 -0.9 616,193 - DVU0545 0.17 +0.2 616,258 + DVU0545 0.32 -0.2 616,343 + DVU0545 0.52 -1.4 616,353 - DVU0545 0.54 +0.0 616,374 + DVU0545 0.59 +0.4 616,388 - DVU0545 0.62 -0.1 616,471 + DVU0545 0.82 -1.4 616,471 + DVU0545 0.82 -1.7 616,479 - DVU0545 0.84 +0.3 616,492 - DVU0545 0.87 +0.0 616,515 + -0.1 616,548 + -0.3 616,554 - +0.5 616,652 - -0.2 616,696 - +0.9 616,698 + -1.6 616,719 - -0.8 616,900 + +0.0 617,009 + -2.4 617,052 - -4.0 617,053 + -3.2 617,085 + -1.8 617,113 - DVU0547 0.10 -3.1 617,120 + DVU0547 0.11 -2.6 617,125 + DVU0547 0.12 -0.7 617,174 - DVU0547 0.16 -2.3 617,226 + DVU0547 0.21 -2.8 617,234 - DVU0547 0.21 +0.6 617,301 - DVU0547 0.27 -0.4 617,313 + DVU0547 0.28 -2.7 617,386 - DVU0547 0.35 -2.9 617,405 + DVU0547 0.37 -3.7 617,529 + DVU0547 0.48 -3.3 617,537 - DVU0547 0.48 -2.1
Or see this region's nucleotide sequence