Experiment: MoLS4 with L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1901 and DVU1902 are separated by 148 nucleotides DVU1902 and mfd are separated by 58 nucleotides
DVU1901: DVU1901 - peptidyl-prolyl cis-trans isomerase domain protein (TIGR), at 1,975,298 to 1,976,233
DVU1901
DVU1902: DVU1902 - conserved hypothetical protein (TIGR), at 1,976,382 to 1,977,320
DVU1902
DVU1903: mfd - transcription-repair coupling factor (TIGR), at 1,977,379 to 1,980,861
mfd
Position (kb)
1976
1977
1978 Strain fitness (log2 ratio)
-2
-1
0
1 at 1976.289 kb on + strand at 1976.461 kb on - strand at 1976.461 kb on - strand at 1976.510 kb on + strand, within DVU1902 at 1976.559 kb on + strand, within DVU1902 at 1976.559 kb on - strand, within DVU1902 at 1976.586 kb on + strand, within DVU1902 at 1976.606 kb on + strand, within DVU1902 at 1976.868 kb on + strand, within DVU1902 at 1976.902 kb on - strand, within DVU1902 at 1976.912 kb on - strand, within DVU1902 at 1976.930 kb on + strand, within DVU1902 at 1976.982 kb on - strand, within DVU1902 at 1977.128 kb on - strand, within DVU1902 at 1977.138 kb on - strand, within DVU1902 at 1977.141 kb on + strand, within DVU1902 at 1977.269 kb on - strand at 1977.269 kb on - strand at 1977.270 kb on - strand at 1977.326 kb on - strand at 1977.418 kb on - strand at 1977.449 kb on - strand at 1977.559 kb on + strand at 1977.604 kb on - strand at 1977.604 kb on - strand at 1977.604 kb on - strand at 1977.621 kb on - strand at 1977.726 kb on + strand at 1977.729 kb on - strand, within mfd at 1977.766 kb on - strand, within mfd at 1977.863 kb on + strand, within mfd at 1977.863 kb on + strand, within mfd at 1978.005 kb on + strand, within mfd at 1978.023 kb on - strand, within mfd at 1978.148 kb on + strand, within mfd at 1978.208 kb on + strand, within mfd at 1978.280 kb on - strand, within mfd at 1978.302 kb on + strand, within mfd at 1978.315 kb on - strand, within mfd at 1978.315 kb on - strand, within mfd at 1978.315 kb on - strand, within mfd
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Proline (N) remove 1,976,289 + -0.3 1,976,461 - +1.0 1,976,461 - +0.3 1,976,510 + DVU1902 0.14 -1.4 1,976,559 + DVU1902 0.19 -0.5 1,976,559 - DVU1902 0.19 -0.9 1,976,586 + DVU1902 0.22 -0.3 1,976,606 + DVU1902 0.24 -1.0 1,976,868 + DVU1902 0.52 +1.0 1,976,902 - DVU1902 0.55 -1.2 1,976,912 - DVU1902 0.56 -1.0 1,976,930 + DVU1902 0.58 +0.4 1,976,982 - DVU1902 0.64 -0.3 1,977,128 - DVU1902 0.79 -1.8 1,977,138 - DVU1902 0.81 -0.4 1,977,141 + DVU1902 0.81 +0.1 1,977,269 - -2.2 1,977,269 - +0.5 1,977,270 - -0.4 1,977,326 - -0.8 1,977,418 - -0.6 1,977,449 - -1.0 1,977,559 + -0.3 1,977,604 - -1.6 1,977,604 - -0.2 1,977,604 - +0.6 1,977,621 - -0.6 1,977,726 + +0.5 1,977,729 - mfd DVU1903 0.10 -0.5 1,977,766 - mfd DVU1903 0.11 -0.2 1,977,863 + mfd DVU1903 0.14 -1.4 1,977,863 + mfd DVU1903 0.14 -0.4 1,978,005 + mfd DVU1903 0.18 -0.5 1,978,023 - mfd DVU1903 0.18 -0.6 1,978,148 + mfd DVU1903 0.22 -0.4 1,978,208 + mfd DVU1903 0.24 -1.1 1,978,280 - mfd DVU1903 0.26 -0.5 1,978,302 + mfd DVU1903 0.27 -0.7 1,978,315 - mfd DVU1903 0.27 -0.7 1,978,315 - mfd DVU1903 0.27 -2.3 1,978,315 - mfd DVU1903 0.27 -2.7
Or see this region's nucleotide sequence