Experiment: MoLS4 with L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1008 and DVU1009 are separated by 343 nucleotides DVU1009 and DVU1012 are separated by 739 nucleotides
DVU1008: DVU1008 - hypothetical protein (TIGR), at 1,103,500 to 1,104,303
DVU1008
DVU1009: DVU1009 - hypothetical protein (TIGR), at 1,104,647 to 1,105,261
DVU1009
DVU1012: DVU1012 - hemolysin-type calcium-binding repeat protein (TIGR), at 1,106,001 to 1,115,117
DVU1012
Position (kb)
1104
1105
1106 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1103.687 kb on + strand, within DVU1008 at 1103.733 kb on - strand, within DVU1008 at 1103.836 kb on - strand, within DVU1008 at 1103.853 kb on + strand, within DVU1008 at 1103.858 kb on + strand, within DVU1008 at 1103.871 kb on - strand, within DVU1008 at 1103.876 kb on - strand, within DVU1008 at 1103.916 kb on - strand, within DVU1008 at 1103.940 kb on + strand, within DVU1008 at 1104.066 kb on + strand, within DVU1008 at 1104.154 kb on + strand, within DVU1008 at 1104.185 kb on - strand, within DVU1008 at 1104.393 kb on + strand at 1104.433 kb on + strand at 1104.602 kb on - strand at 1104.604 kb on - strand at 1104.653 kb on - strand at 1104.839 kb on + strand, within DVU1009 at 1104.865 kb on + strand, within DVU1009 at 1105.032 kb on - strand, within DVU1009 at 1105.052 kb on - strand, within DVU1009 at 1105.629 kb on - strand at 1105.636 kb on + strand at 1105.715 kb on + strand at 1105.743 kb on - strand at 1105.769 kb on - strand at 1105.959 kb on + strand at 1106.035 kb on - strand at 1106.096 kb on - strand at 1106.173 kb on + strand at 1106.222 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Proline (N) remove 1,103,687 + DVU1008 0.23 +0.3 1,103,733 - DVU1008 0.29 +0.2 1,103,836 - DVU1008 0.42 -0.7 1,103,853 + DVU1008 0.44 -1.5 1,103,858 + DVU1008 0.45 -1.4 1,103,871 - DVU1008 0.46 +0.6 1,103,876 - DVU1008 0.47 -0.1 1,103,916 - DVU1008 0.52 +1.9 1,103,940 + DVU1008 0.55 -0.2 1,104,066 + DVU1008 0.70 -0.3 1,104,154 + DVU1008 0.81 +0.0 1,104,185 - DVU1008 0.85 +1.0 1,104,393 + +0.0 1,104,433 + -0.4 1,104,602 - +0.5 1,104,604 - -0.0 1,104,653 - -0.8 1,104,839 + DVU1009 0.31 +0.5 1,104,865 + DVU1009 0.35 +1.9 1,105,032 - DVU1009 0.63 +0.7 1,105,052 - DVU1009 0.66 -0.4 1,105,629 - -0.2 1,105,636 + -1.1 1,105,715 + -0.5 1,105,743 - +0.6 1,105,769 - -0.4 1,105,959 + -0.9 1,106,035 - -0.2 1,106,096 - +0.1 1,106,173 + -1.1 1,106,222 + -1.9
Or see this region's nucleotide sequence