Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2983

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2982 and Rru_A2983 are separated by 181 nucleotidesRru_A2983 and Rru_A2984 are separated by 202 nucleotides Rru_A2982: Rru_A2982 - O-methyltransferase, family 2 (NCBI), at 3,433,496 to 3,434,686 _A2982 Rru_A2983: Rru_A2983 - Polyprenyl synthetase (NCBI), at 3,434,868 to 3,435,737 _A2983 Rru_A2984: Rru_A2984 - CrtD protein (NCBI), at 3,435,940 to 3,437,451 _A2984 Position (kb) 3434 3435 3436Strain fitness (log2 ratio) -2 -1 0 1at 3434.193 kb on + strand, within Rru_A2982at 3434.193 kb on + strand, within Rru_A2982at 3434.193 kb on + strand, within Rru_A2982at 3434.193 kb on + strand, within Rru_A2982at 3434.268 kb on + strand, within Rru_A2982at 3434.521 kb on - strand, within Rru_A2982at 3434.604 kb on + strandat 3434.604 kb on + strandat 3434.605 kb on - strandat 3434.925 kb on - strandat 3435.128 kb on - strand, within Rru_A2983at 3435.436 kb on + strand, within Rru_A2983at 3435.719 kb on + strandat 3435.719 kb on + strandat 3435.719 kb on + strandat 3435.719 kb on + strandat 3435.816 kb on + strandat 3435.817 kb on - strandat 3435.825 kb on - strandat 3435.932 kb on - strandat 3436.519 kb on + strand, within Rru_A2984at 3436.520 kb on - strand, within Rru_A2984at 3436.528 kb on + strand, within Rru_A2984at 3436.528 kb on + strand, within Rru_A2984at 3436.528 kb on + strand, within Rru_A2984at 3436.528 kb on + strand, within Rru_A2984at 3436.528 kb on + strand, within Rru_A2984at 3436.528 kb on + strand, within Rru_A2984at 3436.529 kb on - strand, within Rru_A2984at 3436.529 kb on - strand, within Rru_A2984at 3436.732 kb on - strand, within Rru_A2984at 3436.732 kb on - strand, within Rru_A2984at 3436.732 kb on - strand, within Rru_A2984at 3436.732 kb on - strand, within Rru_A2984at 3436.732 kb on - strand, within Rru_A2984

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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3,434,193 + Rru_A2982 0.59 +0.1
3,434,193 + Rru_A2982 0.59 -0.5
3,434,193 + Rru_A2982 0.59 -0.2
3,434,193 + Rru_A2982 0.59 +0.1
3,434,268 + Rru_A2982 0.65 -0.3
3,434,521 - Rru_A2982 0.86 -0.4
3,434,604 + -0.2
3,434,604 + +0.2
3,434,605 - -0.3
3,434,925 - -0.2
3,435,128 - Rru_A2983 0.30 -0.6
3,435,436 + Rru_A2983 0.65 -0.3
3,435,719 + +0.2
3,435,719 + -0.9
3,435,719 + -0.9
3,435,719 + +0.1
3,435,816 + -0.3
3,435,817 - +0.3
3,435,825 - +0.0
3,435,932 - +0.1
3,436,519 + Rru_A2984 0.38 -0.1
3,436,520 - Rru_A2984 0.38 -0.1
3,436,528 + Rru_A2984 0.39 +1.1
3,436,528 + Rru_A2984 0.39 +0.2
3,436,528 + Rru_A2984 0.39 -0.2
3,436,528 + Rru_A2984 0.39 -0.1
3,436,528 + Rru_A2984 0.39 +1.0
3,436,528 + Rru_A2984 0.39 +0.1
3,436,529 - Rru_A2984 0.39 +0.1
3,436,529 - Rru_A2984 0.39 -0.1
3,436,732 - Rru_A2984 0.52 -1.8
3,436,732 - Rru_A2984 0.52 +0.2
3,436,732 - Rru_A2984 0.52 -0.5
3,436,732 - Rru_A2984 0.52 +0.2
3,436,732 - Rru_A2984 0.52 +0.1

Or see this region's nucleotide sequence