Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2410

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2409 and Rru_A2410 are separated by 234 nucleotidesRru_A2410 and Rru_A2411 overlap by 4 nucleotides Rru_A2409: Rru_A2409 - GlpX (NCBI), at 2,808,922 to 2,809,929 _A2409 Rru_A2410: Rru_A2410 - Homoserine dehydrogenase (NCBI), at 2,810,164 to 2,811,456 _A2410 Rru_A2411: Rru_A2411 - Aminotransferase, class I and II (NCBI), at 2,811,453 to 2,812,694 _A2411 Position (kb) 2810 2811 2812Strain fitness (log2 ratio) -2 -1 0 1 2at 2809.264 kb on - strand, within Rru_A2409at 2809.264 kb on - strand, within Rru_A2409at 2809.264 kb on - strand, within Rru_A2409at 2809.264 kb on - strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.265 kb on + strand, within Rru_A2409at 2809.266 kb on - strand, within Rru_A2409at 2809.266 kb on - strand, within Rru_A2409at 2809.266 kb on - strand, within Rru_A2409at 2809.266 kb on - strand, within Rru_A2409at 2809.266 kb on - strand, within Rru_A2409at 2809.266 kb on - strand, within Rru_A2409at 2809.269 kb on + strand, within Rru_A2409at 2809.269 kb on + strand, within Rru_A2409at 2809.269 kb on + strand, within Rru_A2409at 2809.269 kb on + strand, within Rru_A2409at 2809.269 kb on + strand, within Rru_A2409at 2809.269 kb on + strand, within Rru_A2409at 2809.269 kb on + strand, within Rru_A2409at 2809.269 kb on + strand, within Rru_A2409at 2809.270 kb on - strand, within Rru_A2409at 2809.270 kb on - strand, within Rru_A2409at 2809.524 kb on + strand, within Rru_A2409at 2809.526 kb on + strand, within Rru_A2409at 2809.526 kb on + strand, within Rru_A2409at 2809.526 kb on + strand, within Rru_A2409at 2809.526 kb on + strand, within Rru_A2409at 2809.527 kb on - strand, within Rru_A2409at 2809.814 kb on + strand, within Rru_A2409at 2809.936 kb on + strandat 2809.936 kb on + strandat 2809.937 kb on - strandat 2810.052 kb on - strandat 2810.165 kb on + strandat 2810.165 kb on + strandat 2810.166 kb on - strandat 2810.166 kb on - strandat 2810.406 kb on - strand, within Rru_A2410at 2810.406 kb on - strand, within Rru_A2410at 2810.406 kb on - strand, within Rru_A2410at 2810.408 kb on + strand, within Rru_A2410at 2810.409 kb on - strand, within Rru_A2410at 2810.409 kb on - strand, within Rru_A2410at 2811.456 kb on + strandat 2811.543 kb on - strandat 2811.543 kb on - strandat 2811.750 kb on - strand, within Rru_A2411at 2811.886 kb on + strand, within Rru_A2411at 2811.895 kb on + strand, within Rru_A2411at 2811.973 kb on + strand, within Rru_A2411at 2811.973 kb on + strand, within Rru_A2411at 2811.974 kb on - strand, within Rru_A2411at 2811.974 kb on - strand, within Rru_A2411at 2811.974 kb on - strand, within Rru_A2411at 2812.060 kb on + strand, within Rru_A2411at 2812.061 kb on - strand, within Rru_A2411at 2812.061 kb on - strand, within Rru_A2411at 2812.061 kb on - strand, within Rru_A2411at 2812.061 kb on - strand, within Rru_A2411at 2812.098 kb on - strand, within Rru_A2411at 2812.154 kb on - strand, within Rru_A2411at 2812.265 kb on + strand, within Rru_A2411at 2812.451 kb on - strand, within Rru_A2411at 2812.451 kb on - strand, within Rru_A2411at 2812.451 kb on - strand, within Rru_A2411at 2812.451 kb on - strand, within Rru_A2411at 2812.454 kb on - strand, within Rru_A2411at 2812.454 kb on - strand, within Rru_A2411

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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2,809,264 - Rru_A2409 0.34 -0.5
2,809,264 - Rru_A2409 0.34 -0.2
2,809,264 - Rru_A2409 0.34 -1.2
2,809,264 - Rru_A2409 0.34 -0.3
2,809,265 + Rru_A2409 0.34 -0.9
2,809,265 + Rru_A2409 0.34 -0.4
2,809,265 + Rru_A2409 0.34 +0.4
2,809,265 + Rru_A2409 0.34 +0.2
2,809,265 + Rru_A2409 0.34 +0.0
2,809,265 + Rru_A2409 0.34 -0.6
2,809,265 + Rru_A2409 0.34 +0.7
2,809,265 + Rru_A2409 0.34 +0.2
2,809,265 + Rru_A2409 0.34 -0.4
2,809,265 + Rru_A2409 0.34 +2.2
2,809,265 + Rru_A2409 0.34 -0.1
2,809,265 + Rru_A2409 0.34 +0.5
2,809,265 + Rru_A2409 0.34 -0.2
2,809,265 + Rru_A2409 0.34 +0.1
2,809,265 + Rru_A2409 0.34 -1.3
2,809,265 + Rru_A2409 0.34 -0.2
2,809,265 + Rru_A2409 0.34 +0.4
2,809,265 + Rru_A2409 0.34 -0.5
2,809,266 - Rru_A2409 0.34 +0.3
2,809,266 - Rru_A2409 0.34 -0.3
2,809,266 - Rru_A2409 0.34 +0.7
2,809,266 - Rru_A2409 0.34 -0.6
2,809,266 - Rru_A2409 0.34 -0.3
2,809,266 - Rru_A2409 0.34 -0.2
2,809,269 + Rru_A2409 0.34 -0.4
2,809,269 + Rru_A2409 0.34 -0.1
2,809,269 + Rru_A2409 0.34 -0.2
2,809,269 + Rru_A2409 0.34 -2.5
2,809,269 + Rru_A2409 0.34 +0.4
2,809,269 + Rru_A2409 0.34 +0.4
2,809,269 + Rru_A2409 0.34 -0.6
2,809,269 + Rru_A2409 0.34 -0.1
2,809,270 - Rru_A2409 0.35 +0.7
2,809,270 - Rru_A2409 0.35 +0.4
2,809,524 + Rru_A2409 0.60 +0.2
2,809,526 + Rru_A2409 0.60 -0.8
2,809,526 + Rru_A2409 0.60 +0.6
2,809,526 + Rru_A2409 0.60 -0.4
2,809,526 + Rru_A2409 0.60 -2.0
2,809,527 - Rru_A2409 0.60 -0.2
2,809,814 + Rru_A2409 0.88 -0.4
2,809,936 + +1.2
2,809,936 + +0.1
2,809,937 - -0.1
2,810,052 - -1.6
2,810,165 + -0.3
2,810,165 + -0.0
2,810,166 - -1.1
2,810,166 - +1.6
2,810,406 - Rru_A2410 0.19 +0.2
2,810,406 - Rru_A2410 0.19 -0.1
2,810,406 - Rru_A2410 0.19 -0.6
2,810,408 + Rru_A2410 0.19 -0.9
2,810,409 - Rru_A2410 0.19 -0.4
2,810,409 - Rru_A2410 0.19 -0.6
2,811,456 + -0.8
2,811,543 - -1.5
2,811,543 - +0.0
2,811,750 - Rru_A2411 0.24 +0.1
2,811,886 + Rru_A2411 0.35 -0.0
2,811,895 + Rru_A2411 0.36 +0.4
2,811,973 + Rru_A2411 0.42 -0.9
2,811,973 + Rru_A2411 0.42 -0.7
2,811,974 - Rru_A2411 0.42 -0.7
2,811,974 - Rru_A2411 0.42 -0.4
2,811,974 - Rru_A2411 0.42 -1.0
2,812,060 + Rru_A2411 0.49 -0.8
2,812,061 - Rru_A2411 0.49 -0.5
2,812,061 - Rru_A2411 0.49 +0.3
2,812,061 - Rru_A2411 0.49 -0.2
2,812,061 - Rru_A2411 0.49 -0.4
2,812,098 - Rru_A2411 0.52 +0.2
2,812,154 - Rru_A2411 0.56 +0.1
2,812,265 + Rru_A2411 0.65 -0.7
2,812,451 - Rru_A2411 0.80 -1.0
2,812,451 - Rru_A2411 0.80 -0.2
2,812,451 - Rru_A2411 0.80 -0.0
2,812,451 - Rru_A2411 0.80 -0.3
2,812,454 - Rru_A2411 0.81 +0.0
2,812,454 - Rru_A2411 0.81 -0.4

Or see this region's nucleotide sequence