Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2409 and Rru_A2410 are separated by 234 nucleotides Rru_A2410 and Rru_A2411 overlap by 4 nucleotides
Rru_A2409: Rru_A2409 - GlpX (NCBI), at 2,808,922 to 2,809,929
_A2409
Rru_A2410: Rru_A2410 - Homoserine dehydrogenase (NCBI), at 2,810,164 to 2,811,456
_A2410
Rru_A2411: Rru_A2411 - Aminotransferase, class I and II (NCBI), at 2,811,453 to 2,812,694
_A2411
Position (kb)
2810
2811
2812 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2809.264 kb on - strand, within Rru_A2409 at 2809.264 kb on - strand, within Rru_A2409 at 2809.264 kb on - strand, within Rru_A2409 at 2809.264 kb on - strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.265 kb on + strand, within Rru_A2409 at 2809.266 kb on - strand, within Rru_A2409 at 2809.266 kb on - strand, within Rru_A2409 at 2809.266 kb on - strand, within Rru_A2409 at 2809.266 kb on - strand, within Rru_A2409 at 2809.266 kb on - strand, within Rru_A2409 at 2809.266 kb on - strand, within Rru_A2409 at 2809.269 kb on + strand, within Rru_A2409 at 2809.269 kb on + strand, within Rru_A2409 at 2809.269 kb on + strand, within Rru_A2409 at 2809.269 kb on + strand, within Rru_A2409 at 2809.269 kb on + strand, within Rru_A2409 at 2809.269 kb on + strand, within Rru_A2409 at 2809.269 kb on + strand, within Rru_A2409 at 2809.269 kb on + strand, within Rru_A2409 at 2809.270 kb on - strand, within Rru_A2409 at 2809.270 kb on - strand, within Rru_A2409 at 2809.524 kb on + strand, within Rru_A2409 at 2809.526 kb on + strand, within Rru_A2409 at 2809.526 kb on + strand, within Rru_A2409 at 2809.526 kb on + strand, within Rru_A2409 at 2809.526 kb on + strand, within Rru_A2409 at 2809.527 kb on - strand, within Rru_A2409 at 2809.814 kb on + strand, within Rru_A2409 at 2809.936 kb on + strand at 2809.936 kb on + strand at 2809.937 kb on - strand at 2810.052 kb on - strand at 2810.165 kb on + strand at 2810.165 kb on + strand at 2810.166 kb on - strand at 2810.166 kb on - strand at 2810.406 kb on - strand, within Rru_A2410 at 2810.406 kb on - strand, within Rru_A2410 at 2810.406 kb on - strand, within Rru_A2410 at 2810.408 kb on + strand, within Rru_A2410 at 2810.409 kb on - strand, within Rru_A2410 at 2810.409 kb on - strand, within Rru_A2410 at 2811.456 kb on + strand at 2811.543 kb on - strand at 2811.543 kb on - strand at 2811.750 kb on - strand, within Rru_A2411 at 2811.886 kb on + strand, within Rru_A2411 at 2811.895 kb on + strand, within Rru_A2411 at 2811.973 kb on + strand, within Rru_A2411 at 2811.973 kb on + strand, within Rru_A2411 at 2811.974 kb on - strand, within Rru_A2411 at 2811.974 kb on - strand, within Rru_A2411 at 2811.974 kb on - strand, within Rru_A2411 at 2812.060 kb on + strand, within Rru_A2411 at 2812.061 kb on - strand, within Rru_A2411 at 2812.061 kb on - strand, within Rru_A2411 at 2812.061 kb on - strand, within Rru_A2411 at 2812.061 kb on - strand, within Rru_A2411 at 2812.098 kb on - strand, within Rru_A2411 at 2812.154 kb on - strand, within Rru_A2411 at 2812.265 kb on + strand, within Rru_A2411 at 2812.451 kb on - strand, within Rru_A2411 at 2812.451 kb on - strand, within Rru_A2411 at 2812.451 kb on - strand, within Rru_A2411 at 2812.451 kb on - strand, within Rru_A2411 at 2812.454 kb on - strand, within Rru_A2411 at 2812.454 kb on - strand, within Rru_A2411
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 2,809,264 - Rru_A2409 0.34 -0.5 2,809,264 - Rru_A2409 0.34 -0.2 2,809,264 - Rru_A2409 0.34 -1.2 2,809,264 - Rru_A2409 0.34 -0.3 2,809,265 + Rru_A2409 0.34 -0.9 2,809,265 + Rru_A2409 0.34 -0.4 2,809,265 + Rru_A2409 0.34 +0.4 2,809,265 + Rru_A2409 0.34 +0.2 2,809,265 + Rru_A2409 0.34 +0.0 2,809,265 + Rru_A2409 0.34 -0.6 2,809,265 + Rru_A2409 0.34 +0.7 2,809,265 + Rru_A2409 0.34 +0.2 2,809,265 + Rru_A2409 0.34 -0.4 2,809,265 + Rru_A2409 0.34 +2.2 2,809,265 + Rru_A2409 0.34 -0.1 2,809,265 + Rru_A2409 0.34 +0.5 2,809,265 + Rru_A2409 0.34 -0.2 2,809,265 + Rru_A2409 0.34 +0.1 2,809,265 + Rru_A2409 0.34 -1.3 2,809,265 + Rru_A2409 0.34 -0.2 2,809,265 + Rru_A2409 0.34 +0.4 2,809,265 + Rru_A2409 0.34 -0.5 2,809,266 - Rru_A2409 0.34 +0.3 2,809,266 - Rru_A2409 0.34 -0.3 2,809,266 - Rru_A2409 0.34 +0.7 2,809,266 - Rru_A2409 0.34 -0.6 2,809,266 - Rru_A2409 0.34 -0.3 2,809,266 - Rru_A2409 0.34 -0.2 2,809,269 + Rru_A2409 0.34 -0.4 2,809,269 + Rru_A2409 0.34 -0.1 2,809,269 + Rru_A2409 0.34 -0.2 2,809,269 + Rru_A2409 0.34 -2.5 2,809,269 + Rru_A2409 0.34 +0.4 2,809,269 + Rru_A2409 0.34 +0.4 2,809,269 + Rru_A2409 0.34 -0.6 2,809,269 + Rru_A2409 0.34 -0.1 2,809,270 - Rru_A2409 0.35 +0.7 2,809,270 - Rru_A2409 0.35 +0.4 2,809,524 + Rru_A2409 0.60 +0.2 2,809,526 + Rru_A2409 0.60 -0.8 2,809,526 + Rru_A2409 0.60 +0.6 2,809,526 + Rru_A2409 0.60 -0.4 2,809,526 + Rru_A2409 0.60 -2.0 2,809,527 - Rru_A2409 0.60 -0.2 2,809,814 + Rru_A2409 0.88 -0.4 2,809,936 + +1.2 2,809,936 + +0.1 2,809,937 - -0.1 2,810,052 - -1.6 2,810,165 + -0.3 2,810,165 + -0.0 2,810,166 - -1.1 2,810,166 - +1.6 2,810,406 - Rru_A2410 0.19 +0.2 2,810,406 - Rru_A2410 0.19 -0.1 2,810,406 - Rru_A2410 0.19 -0.6 2,810,408 + Rru_A2410 0.19 -0.9 2,810,409 - Rru_A2410 0.19 -0.4 2,810,409 - Rru_A2410 0.19 -0.6 2,811,456 + -0.8 2,811,543 - -1.5 2,811,543 - +0.0 2,811,750 - Rru_A2411 0.24 +0.1 2,811,886 + Rru_A2411 0.35 -0.0 2,811,895 + Rru_A2411 0.36 +0.4 2,811,973 + Rru_A2411 0.42 -0.9 2,811,973 + Rru_A2411 0.42 -0.7 2,811,974 - Rru_A2411 0.42 -0.7 2,811,974 - Rru_A2411 0.42 -0.4 2,811,974 - Rru_A2411 0.42 -1.0 2,812,060 + Rru_A2411 0.49 -0.8 2,812,061 - Rru_A2411 0.49 -0.5 2,812,061 - Rru_A2411 0.49 +0.3 2,812,061 - Rru_A2411 0.49 -0.2 2,812,061 - Rru_A2411 0.49 -0.4 2,812,098 - Rru_A2411 0.52 +0.2 2,812,154 - Rru_A2411 0.56 +0.1 2,812,265 + Rru_A2411 0.65 -0.7 2,812,451 - Rru_A2411 0.80 -1.0 2,812,451 - Rru_A2411 0.80 -0.2 2,812,451 - Rru_A2411 0.80 -0.0 2,812,451 - Rru_A2411 0.80 -0.3 2,812,454 - Rru_A2411 0.81 +0.0 2,812,454 - Rru_A2411 0.81 -0.4
Or see this region's nucleotide sequence