Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1243

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1241 and Rru_A1242 are separated by 54 nucleotidesRru_A1242 and Rru_AR0026 are separated by 283 nucleotidesRru_AR0026 and Rru_A1243 are separated by 139 nucleotidesRru_A1243 and Rru_A1244 are separated by 303 nucleotidesRru_A1244 and Rru_A1245 are separated by 76 nucleotides Rru_A1241: Rru_A1241 - Ribosomal protein L27 (NCBI), at 1,464,508 to 1,464,765 _A1241 Rru_A1242: Rru_A1242 - Ribosomal protein L21 (NCBI), at 1,464,820 to 1,465,122 _A1242 Rru_AR0026: Rru_AR0026 - tRNA-Ser (NCBI), at 1,465,406 to 1,465,495 _AR0026 Rru_A1243: Rru_A1243 - Cytochrome B561 (NCBI), at 1,465,635 to 1,466,303 _A1243 Rru_A1244: Rru_A1244 - hypothetical protein (NCBI), at 1,466,607 to 1,466,798 _A1244 Rru_A1245: Rru_A1245 - Transcriptional Regulator, Crp/Fnr family (NCBI), at 1,466,875 to 1,467,525 _A1245 Position (kb) 1465 1466 1467Strain fitness (log2 ratio) -2 -1 0 1 2at 1465.151 kb on - strandat 1465.257 kb on + strandat 1465.258 kb on - strandat 1465.319 kb on + strandat 1465.849 kb on - strand, within Rru_A1243at 1465.849 kb on - strand, within Rru_A1243at 1465.879 kb on + strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1465.880 kb on - strand, within Rru_A1243at 1466.041 kb on + strand, within Rru_A1243at 1466.146 kb on + strand, within Rru_A1243at 1466.147 kb on - strand, within Rru_A1243at 1466.147 kb on - strand, within Rru_A1243at 1466.159 kb on + strand, within Rru_A1243at 1466.160 kb on - strand, within Rru_A1243at 1466.191 kb on + strand, within Rru_A1243at 1466.191 kb on + strand, within Rru_A1243at 1466.192 kb on - strand, within Rru_A1243at 1466.297 kb on + strandat 1466.297 kb on + strandat 1466.298 kb on - strandat 1466.298 kb on - strandat 1466.308 kb on + strandat 1466.408 kb on + strandat 1466.561 kb on + strandat 1466.561 kb on + strandat 1466.562 kb on - strandat 1466.562 kb on - strandat 1466.645 kb on + strand, within Rru_A1244at 1466.645 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.647 kb on + strand, within Rru_A1244at 1466.648 kb on - strand, within Rru_A1244at 1466.648 kb on - strand, within Rru_A1244at 1466.648 kb on - strand, within Rru_A1244at 1466.806 kb on + strandat 1466.806 kb on + strandat 1466.806 kb on + strandat 1466.807 kb on - strandat 1466.807 kb on - strandat 1466.814 kb on - strandat 1466.814 kb on - strandat 1467.143 kb on + strand, within Rru_A1245at 1467.143 kb on + strand, within Rru_A1245at 1467.144 kb on - strand, within Rru_A1245at 1467.144 kb on - strand, within Rru_A1245at 1467.144 kb on - strand, within Rru_A1245at 1467.144 kb on - strand, within Rru_A1245at 1467.258 kb on - strand, within Rru_A1245at 1467.289 kb on + strand, within Rru_A1245at 1467.289 kb on + strand, within Rru_A1245at 1467.290 kb on - strand, within Rru_A1245at 1467.290 kb on - strand, within Rru_A1245

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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1,465,151 - -0.4
1,465,257 + +2.7
1,465,258 - -0.2
1,465,319 + +0.2
1,465,849 - Rru_A1243 0.32 -0.6
1,465,849 - Rru_A1243 0.32 -0.6
1,465,879 + Rru_A1243 0.36 -0.0
1,465,880 - Rru_A1243 0.37 -0.8
1,465,880 - Rru_A1243 0.37 -0.1
1,465,880 - Rru_A1243 0.37 -0.3
1,465,880 - Rru_A1243 0.37 -0.4
1,465,880 - Rru_A1243 0.37 -0.5
1,466,041 + Rru_A1243 0.61 -2.0
1,466,146 + Rru_A1243 0.76 -0.6
1,466,147 - Rru_A1243 0.77 -0.7
1,466,147 - Rru_A1243 0.77 -0.4
1,466,159 + Rru_A1243 0.78 -0.5
1,466,160 - Rru_A1243 0.78 +0.7
1,466,191 + Rru_A1243 0.83 -1.5
1,466,191 + Rru_A1243 0.83 -0.4
1,466,192 - Rru_A1243 0.83 +0.4
1,466,297 + -0.9
1,466,297 + -0.2
1,466,298 - -0.4
1,466,298 - -0.9
1,466,308 + -0.4
1,466,408 + +0.5
1,466,561 + -0.1
1,466,561 + -0.4
1,466,562 - -0.4
1,466,562 - +0.1
1,466,645 + Rru_A1244 0.20 -0.4
1,466,645 + Rru_A1244 0.20 -0.8
1,466,647 + Rru_A1244 0.21 -2.0
1,466,647 + Rru_A1244 0.21 +0.4
1,466,647 + Rru_A1244 0.21 +0.9
1,466,647 + Rru_A1244 0.21 -0.8
1,466,647 + Rru_A1244 0.21 +1.0
1,466,648 - Rru_A1244 0.21 +0.1
1,466,648 - Rru_A1244 0.21 -1.0
1,466,648 - Rru_A1244 0.21 +0.3
1,466,806 + -0.2
1,466,806 + -0.4
1,466,806 + +0.6
1,466,807 - -0.4
1,466,807 - +0.1
1,466,814 - +0.4
1,466,814 - +0.4
1,467,143 + Rru_A1245 0.41 +0.2
1,467,143 + Rru_A1245 0.41 -0.3
1,467,144 - Rru_A1245 0.41 -0.3
1,467,144 - Rru_A1245 0.41 -0.7
1,467,144 - Rru_A1245 0.41 -0.3
1,467,144 - Rru_A1245 0.41 +0.3
1,467,258 - Rru_A1245 0.59 +0.2
1,467,289 + Rru_A1245 0.64 +1.0
1,467,289 + Rru_A1245 0.64 -1.0
1,467,290 - Rru_A1245 0.64 -0.8
1,467,290 - Rru_A1245 0.64 +0.2

Or see this region's nucleotide sequence