Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1006

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1005 and Rru_A1006 are separated by 222 nucleotidesRru_A1006 and Rru_A1007 are separated by 60 nucleotidesRru_A1007 and Rru_A1008 are separated by 26 nucleotides Rru_A1005: Rru_A1005 - Glycosyl transferase, family 2 (NCBI), at 1,191,973 to 1,193,007 _A1005 Rru_A1006: Rru_A1006 - Acyltransferase 3 (NCBI), at 1,193,230 to 1,194,330 _A1006 Rru_A1007: Rru_A1007 - Nitrogenase-associated protein (NCBI), at 1,194,391 to 1,194,822 _A1007 Rru_A1008: Rru_A1008 - ADP-ribosyl-(dinitrogen reductase) hydrolase (NCBI), at 1,194,849 to 1,195,733 _A1008 Position (kb) 1193 1194 1195Strain fitness (log2 ratio) -2 -1 0 1 2at 1193.251 kb on + strandat 1193.251 kb on + strandat 1193.252 kb on - strandat 1193.252 kb on - strandat 1193.353 kb on + strand, within Rru_A1006at 1193.354 kb on - strand, within Rru_A1006at 1193.354 kb on - strand, within Rru_A1006at 1193.395 kb on + strand, within Rru_A1006at 1193.395 kb on + strand, within Rru_A1006at 1193.396 kb on - strand, within Rru_A1006at 1193.443 kb on + strand, within Rru_A1006at 1193.515 kb on - strand, within Rru_A1006at 1193.533 kb on - strand, within Rru_A1006at 1193.590 kb on + strand, within Rru_A1006at 1193.591 kb on - strand, within Rru_A1006at 1193.705 kb on + strand, within Rru_A1006at 1193.706 kb on - strand, within Rru_A1006at 1193.864 kb on + strand, within Rru_A1006at 1193.864 kb on + strand, within Rru_A1006at 1193.865 kb on - strand, within Rru_A1006at 1193.923 kb on + strand, within Rru_A1006at 1193.940 kb on + strand, within Rru_A1006at 1193.941 kb on - strand, within Rru_A1006at 1194.128 kb on - strand, within Rru_A1006at 1194.128 kb on - strand, within Rru_A1006at 1194.201 kb on + strand, within Rru_A1006at 1194.201 kb on + strand, within Rru_A1006at 1194.616 kb on + strand, within Rru_A1007at 1194.616 kb on + strand, within Rru_A1007at 1194.684 kb on - strand, within Rru_A1007at 1194.914 kb on + strandat 1194.914 kb on + strandat 1194.915 kb on - strandat 1194.958 kb on + strand, within Rru_A1008at 1194.959 kb on - strand, within Rru_A1008at 1194.959 kb on - strand, within Rru_A1008at 1195.063 kb on + strand, within Rru_A1008at 1195.063 kb on + strand, within Rru_A1008at 1195.063 kb on + strand, within Rru_A1008at 1195.063 kb on + strand, within Rru_A1008at 1195.063 kb on + strand, within Rru_A1008at 1195.063 kb on + strand, within Rru_A1008at 1195.063 kb on + strand, within Rru_A1008at 1195.063 kb on + strand, within Rru_A1008at 1195.064 kb on - strand, within Rru_A1008at 1195.064 kb on - strand, within Rru_A1008at 1195.064 kb on - strand, within Rru_A1008at 1195.064 kb on - strand, within Rru_A1008at 1195.064 kb on - strand, within Rru_A1008at 1195.067 kb on - strand, within Rru_A1008at 1195.067 kb on - strand, within Rru_A1008at 1195.097 kb on + strand, within Rru_A1008at 1195.098 kb on - strand, within Rru_A1008at 1195.099 kb on + strand, within Rru_A1008at 1195.099 kb on + strand, within Rru_A1008at 1195.099 kb on + strand, within Rru_A1008at 1195.099 kb on + strand, within Rru_A1008at 1195.099 kb on + strand, within Rru_A1008at 1195.099 kb on + strand, within Rru_A1008at 1195.099 kb on + strand, within Rru_A1008at 1195.119 kb on - strand, within Rru_A1008at 1195.119 kb on - strand, within Rru_A1008at 1195.120 kb on + strand, within Rru_A1008at 1195.120 kb on + strand, within Rru_A1008at 1195.120 kb on + strand, within Rru_A1008at 1195.120 kb on + strand, within Rru_A1008at 1195.121 kb on - strand, within Rru_A1008at 1195.259 kb on + strand, within Rru_A1008

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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1,193,251 + -0.3
1,193,251 + +0.2
1,193,252 - +0.7
1,193,252 - +1.0
1,193,353 + Rru_A1006 0.11 +0.6
1,193,354 - Rru_A1006 0.11 +0.9
1,193,354 - Rru_A1006 0.11 -0.0
1,193,395 + Rru_A1006 0.15 -0.2
1,193,395 + Rru_A1006 0.15 +0.2
1,193,396 - Rru_A1006 0.15 -0.1
1,193,443 + Rru_A1006 0.19 +0.2
1,193,515 - Rru_A1006 0.26 +1.2
1,193,533 - Rru_A1006 0.28 -0.2
1,193,590 + Rru_A1006 0.33 -0.5
1,193,591 - Rru_A1006 0.33 +0.6
1,193,705 + Rru_A1006 0.43 +1.6
1,193,706 - Rru_A1006 0.43 +2.6
1,193,864 + Rru_A1006 0.58 +0.9
1,193,864 + Rru_A1006 0.58 -0.4
1,193,865 - Rru_A1006 0.58 +0.0
1,193,923 + Rru_A1006 0.63 +0.0
1,193,940 + Rru_A1006 0.64 -0.1
1,193,941 - Rru_A1006 0.65 +0.7
1,194,128 - Rru_A1006 0.82 +1.4
1,194,128 - Rru_A1006 0.82 -1.1
1,194,201 + Rru_A1006 0.88 +0.3
1,194,201 + Rru_A1006 0.88 +0.0
1,194,616 + Rru_A1007 0.52 +0.1
1,194,616 + Rru_A1007 0.52 -0.6
1,194,684 - Rru_A1007 0.68 -0.0
1,194,914 + -0.2
1,194,914 + -0.0
1,194,915 - -1.4
1,194,958 + Rru_A1008 0.12 -0.6
1,194,959 - Rru_A1008 0.12 +0.3
1,194,959 - Rru_A1008 0.12 +0.5
1,195,063 + Rru_A1008 0.24 -0.2
1,195,063 + Rru_A1008 0.24 +0.6
1,195,063 + Rru_A1008 0.24 -0.6
1,195,063 + Rru_A1008 0.24 +0.6
1,195,063 + Rru_A1008 0.24 -0.3
1,195,063 + Rru_A1008 0.24 -2.1
1,195,063 + Rru_A1008 0.24 +0.3
1,195,063 + Rru_A1008 0.24 -0.1
1,195,064 - Rru_A1008 0.24 -0.2
1,195,064 - Rru_A1008 0.24 -0.5
1,195,064 - Rru_A1008 0.24 +0.0
1,195,064 - Rru_A1008 0.24 +1.6
1,195,064 - Rru_A1008 0.24 -0.0
1,195,067 - Rru_A1008 0.25 -0.1
1,195,067 - Rru_A1008 0.25 +0.3
1,195,097 + Rru_A1008 0.28 +0.0
1,195,098 - Rru_A1008 0.28 +0.8
1,195,099 + Rru_A1008 0.28 +0.6
1,195,099 + Rru_A1008 0.28 -0.5
1,195,099 + Rru_A1008 0.28 +0.5
1,195,099 + Rru_A1008 0.28 +0.7
1,195,099 + Rru_A1008 0.28 -0.4
1,195,099 + Rru_A1008 0.28 -0.1
1,195,099 + Rru_A1008 0.28 -0.0
1,195,119 - Rru_A1008 0.31 +2.3
1,195,119 - Rru_A1008 0.31 +0.2
1,195,120 + Rru_A1008 0.31 -0.9
1,195,120 + Rru_A1008 0.31 -0.3
1,195,120 + Rru_A1008 0.31 -0.2
1,195,120 + Rru_A1008 0.31 -0.2
1,195,121 - Rru_A1008 0.31 +0.4
1,195,259 + Rru_A1008 0.46 -0.5

Or see this region's nucleotide sequence