Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0976 and Rru_A0977 overlap by 4 nucleotides Rru_A0977 and Rru_A0978 are separated by 358 nucleotides Rru_A0978 and Rru_A0979 are separated by 96 nucleotides
Rru_A0976: Rru_A0976 - Transcriptional modulator of MazE/toxin, MazF (NCBI), at 1,162,666 to 1,162,995
_A0976
Rru_A0977: Rru_A0977 - hypothetical protein (NCBI), at 1,162,992 to 1,163,294
_A0977
Rru_A0978: Rru_A0978 - Transcriptional Regulator, MarR family (NCBI), at 1,163,653 to 1,164,162
_A0978
Rru_A0979: Rru_A0979 - extracellular solute-binding protein, family 5 (NCBI), at 1,164,259 to 1,165,851
_A0979
Position (kb)
1162
1163
1164 Strain fitness (log2 ratio)
-2
-1
0
1 at 1162.046 kb on - strand at 1162.249 kb on - strand at 1162.293 kb on + strand at 1162.387 kb on + strand at 1162.405 kb on + strand at 1162.406 kb on - strand at 1162.486 kb on + strand at 1162.534 kb on - strand at 1162.534 kb on - strand at 1162.534 kb on - strand at 1162.536 kb on + strand at 1162.717 kb on + strand, within Rru_A0976 at 1162.717 kb on + strand, within Rru_A0976 at 1162.718 kb on - strand, within Rru_A0976 at 1162.718 kb on - strand, within Rru_A0976 at 1162.875 kb on + strand, within Rru_A0976 at 1162.952 kb on + strand, within Rru_A0976 at 1163.155 kb on + strand, within Rru_A0977 at 1163.156 kb on - strand, within Rru_A0977 at 1163.156 kb on - strand, within Rru_A0977 at 1163.318 kb on - strand at 1163.318 kb on - strand at 1163.401 kb on + strand at 1163.713 kb on + strand, within Rru_A0978 at 1163.713 kb on + strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.714 kb on - strand, within Rru_A0978 at 1163.773 kb on + strand, within Rru_A0978 at 1163.872 kb on + strand, within Rru_A0978 at 1163.873 kb on - strand, within Rru_A0978 at 1164.218 kb on + strand at 1164.219 kb on - strand at 1164.219 kb on - strand at 1164.253 kb on - strand at 1164.253 kb on - strand at 1164.253 kb on - strand at 1164.267 kb on + strand at 1164.267 kb on + strand at 1164.267 kb on + strand at 1164.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 1,162,046 - +0.5 1,162,249 - -0.2 1,162,293 + +0.1 1,162,387 + +1.5 1,162,405 + -0.3 1,162,406 - -0.1 1,162,486 + +0.2 1,162,534 - +0.0 1,162,534 - +0.3 1,162,534 - -0.5 1,162,536 + -0.1 1,162,717 + Rru_A0976 0.15 +0.0 1,162,717 + Rru_A0976 0.15 -0.1 1,162,718 - Rru_A0976 0.16 -0.9 1,162,718 - Rru_A0976 0.16 -0.4 1,162,875 + Rru_A0976 0.63 -0.1 1,162,952 + Rru_A0976 0.87 +0.8 1,163,155 + Rru_A0977 0.54 +0.3 1,163,156 - Rru_A0977 0.54 -0.7 1,163,156 - Rru_A0977 0.54 -0.3 1,163,318 - -0.4 1,163,318 - +0.1 1,163,401 + +0.1 1,163,713 + Rru_A0978 0.12 -0.1 1,163,713 + Rru_A0978 0.12 +0.1 1,163,714 - Rru_A0978 0.12 +0.3 1,163,714 - Rru_A0978 0.12 -0.8 1,163,714 - Rru_A0978 0.12 -0.0 1,163,714 - Rru_A0978 0.12 -2.1 1,163,714 - Rru_A0978 0.12 +0.6 1,163,773 + Rru_A0978 0.24 +0.7 1,163,872 + Rru_A0978 0.43 +0.4 1,163,873 - Rru_A0978 0.43 -0.3 1,164,218 + +0.9 1,164,219 - +0.0 1,164,219 - -0.5 1,164,253 - +0.1 1,164,253 - -0.4 1,164,253 - -0.1 1,164,267 + -0.3 1,164,267 + +0.9 1,164,267 + +0.2 1,164,274 - -0.4
Or see this region's nucleotide sequence