Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0820 and Rru_A0821 overlap by 1 nucleotides Rru_A0821 and Rru_A0822 overlap by 4 nucleotides Rru_A0822 and Rru_A0823 are separated by 218 nucleotides Rru_A0823 and Rru_A0824 are separated by 193 nucleotides Rru_A0824 and Rru_A0825 are separated by 214 nucleotides Rru_A0825 and Rru_A0826 are separated by 73 nucleotides
Rru_A0820: Rru_A0820 - HPr kinase (NCBI), at 976,916 to 977,821
_A0820
Rru_A0821: Rru_A0821 - hypothetical protein (NCBI), at 977,821 to 978,279
_A0821
Rru_A0822: Rru_A0822 - hypothetical protein (NCBI), at 978,276 to 978,554
_A0822
Rru_A0823: Rru_A0823 - Cupin region (NCBI), at 978,773 to 979,678
_A0823
Rru_A0824: Rru_A0824 - no description, at 979,872 to 980,066
_A0824
Rru_A0825: Rru_A0825 - putative transposase (NCBI), at 980,281 to 980,577
_A0825
Rru_A0826: Rru_A0826 - hypothetical protein (NCBI), at 980,651 to 980,821
_A0826
Position (kb) 978
979
980 Strain fitness (log2 ratio) -1
0
1
2 at 977.843 kb on + strand at 977.843 kb on + strand at 977.964 kb on + strand, within Rru_A0821 at 977.964 kb on + strand, within Rru_A0821 at 977.964 kb on + strand, within Rru_A0821 at 977.965 kb on - strand, within Rru_A0821 at 977.965 kb on - strand, within Rru_A0821 at 978.364 kb on + strand, within Rru_A0822 at 978.365 kb on - strand, within Rru_A0822 at 978.428 kb on + strand, within Rru_A0822 at 978.428 kb on + strand, within Rru_A0822 at 978.429 kb on - strand, within Rru_A0822 at 978.457 kb on + strand, within Rru_A0822 at 978.457 kb on + strand, within Rru_A0822 at 978.458 kb on - strand, within Rru_A0822 at 978.458 kb on - strand, within Rru_A0822 at 978.609 kb on + strand at 978.609 kb on + strand at 978.610 kb on - strand at 978.610 kb on - strand at 978.635 kb on + strand at 978.687 kb on - strand at 978.750 kb on + strand at 978.859 kb on - strand at 978.890 kb on - strand, within Rru_A0823 at 978.930 kb on - strand, within Rru_A0823 at 978.932 kb on - strand, within Rru_A0823 at 978.932 kb on - strand, within Rru_A0823 at 979.095 kb on - strand, within Rru_A0823 at 979.196 kb on + strand, within Rru_A0823 at 979.197 kb on - strand, within Rru_A0823 at 979.288 kb on + strand, within Rru_A0823 at 979.289 kb on - strand, within Rru_A0823 at 979.417 kb on + strand, within Rru_A0823 at 979.418 kb on - strand, within Rru_A0823 at 979.418 kb on - strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.499 kb on + strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.500 kb on - strand, within Rru_A0823 at 979.702 kb on + strand at 979.702 kb on + strand at 979.704 kb on + strand at 979.704 kb on + strand at 979.704 kb on + strand at 979.705 kb on - strand at 979.708 kb on + strand at 979.708 kb on + strand at 979.708 kb on + strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.709 kb on - strand at 979.750 kb on + strand at 979.750 kb on + strand at 979.750 kb on + strand at 979.751 kb on - strand at 979.763 kb on + strand at 979.873 kb on + strand at 979.990 kb on + strand, within Rru_A0824 at 979.990 kb on + strand, within Rru_A0824 at 979.991 kb on - strand, within Rru_A0824 at 979.991 kb on - strand, within Rru_A0824 at 980.087 kb on + strand at 980.087 kb on + strand at 980.089 kb on + strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.178 kb on - strand at 980.200 kb on + strand at 980.212 kb on + strand at 980.458 kb on + strand, within Rru_A0825 at 980.458 kb on + strand, within Rru_A0825 at 980.470 kb on + strand, within Rru_A0825 at 980.470 kb on + strand, within Rru_A0825 at 980.525 kb on + strand, within Rru_A0825 at 980.526 kb on - strand, within Rru_A0825
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 977,843 + +0.2 977,843 + -0.0 977,964 + Rru_A0821 0.31 -0.1 977,964 + Rru_A0821 0.31 -0.2 977,964 + Rru_A0821 0.31 -0.7 977,965 - Rru_A0821 0.31 -0.2 977,965 - Rru_A0821 0.31 -1.4 978,364 + Rru_A0822 0.32 -0.1 978,365 - Rru_A0822 0.32 +2.1 978,428 + Rru_A0822 0.54 -0.2 978,428 + Rru_A0822 0.54 -0.0 978,429 - Rru_A0822 0.55 -0.6 978,457 + Rru_A0822 0.65 +0.7 978,457 + Rru_A0822 0.65 -0.9 978,458 - Rru_A0822 0.65 -0.0 978,458 - Rru_A0822 0.65 -0.2 978,609 + -0.2 978,609 + -0.7 978,610 - -0.2 978,610 - +0.2 978,635 + -0.3 978,687 - +0.8 978,750 + +0.1 978,859 - +0.1 978,890 - Rru_A0823 0.13 +0.4 978,930 - Rru_A0823 0.17 +0.4 978,932 - Rru_A0823 0.18 +0.3 978,932 - Rru_A0823 0.18 +1.9 979,095 - Rru_A0823 0.36 +0.2 979,196 + Rru_A0823 0.47 +0.6 979,197 - Rru_A0823 0.47 +0.2 979,288 + Rru_A0823 0.57 +1.5 979,289 - Rru_A0823 0.57 +0.2 979,417 + Rru_A0823 0.71 +0.1 979,418 - Rru_A0823 0.71 -1.5 979,418 - Rru_A0823 0.71 -0.4 979,499 + Rru_A0823 0.80 +1.0 979,499 + Rru_A0823 0.80 +1.1 979,499 + Rru_A0823 0.80 +0.1 979,499 + Rru_A0823 0.80 -0.5 979,500 - Rru_A0823 0.80 +0.1 979,500 - Rru_A0823 0.80 +2.0 979,500 - Rru_A0823 0.80 +0.2 979,500 - Rru_A0823 0.80 -0.2 979,702 + -0.8 979,702 + -0.1 979,704 + -0.0 979,704 + +0.4 979,704 + -0.3 979,705 - +0.3 979,708 + +0.1 979,708 + +0.3 979,708 + +0.3 979,709 - -0.0 979,709 - +0.9 979,709 - +0.2 979,709 - +0.2 979,709 - -0.0 979,709 - +0.1 979,709 - +0.7 979,709 - -0.2 979,709 - +0.2 979,709 - -1.0 979,709 - -0.6 979,709 - -0.3 979,709 - +0.7 979,750 + +0.6 979,750 + +0.3 979,750 + -0.3 979,751 - +1.1 979,763 + -0.3 979,873 + +0.5 979,990 + Rru_A0824 0.61 +0.0 979,990 + Rru_A0824 0.61 -0.2 979,991 - Rru_A0824 0.61 -0.2 979,991 - Rru_A0824 0.61 +0.1 980,087 + +1.5 980,087 + +0.6 980,089 + +0.3 980,178 - -0.3 980,178 - -1.7 980,178 - -0.3 980,178 - +0.9 980,178 - -0.2 980,200 + -0.7 980,212 + +0.3 980,458 + Rru_A0825 0.60 -0.7 980,458 + Rru_A0825 0.60 +0.2 980,470 + Rru_A0825 0.64 -0.9 980,470 + Rru_A0825 0.64 -0.6 980,525 + Rru_A0825 0.82 +0.1 980,526 - Rru_A0825 0.82 +0.2
Or see this region's nucleotide sequence