Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0813 and Rru_A0814 are separated by 225 nucleotides Rru_A0814 and Rru_A0815 overlap by 4 nucleotides Rru_A0815 and Rru_A0816 are separated by 126 nucleotides
Rru_A0813: Rru_A0813 - no description, at 968,844 to 969,686
_A0813
Rru_A0814: Rru_A0814 - hypothetical protein (NCBI), at 969,912 to 970,436
_A0814
Rru_A0815: Rru_A0815 - hypothetical protein (NCBI), at 970,433 to 970,804
_A0815
Rru_A0816: Rru_A0816 - hypothetical protein (NCBI), at 970,931 to 972,742
_A0816
Position (kb) 969
970
971 Strain fitness (log2 ratio) -1
0
1
2 at 969.061 kb on + strand, within Rru_A0813 at 969.061 kb on + strand, within Rru_A0813 at 969.061 kb on + strand, within Rru_A0813 at 969.062 kb on - strand, within Rru_A0813 at 969.274 kb on + strand, within Rru_A0813 at 969.275 kb on - strand, within Rru_A0813 at 969.275 kb on - strand, within Rru_A0813 at 969.367 kb on + strand, within Rru_A0813 at 969.367 kb on + strand, within Rru_A0813 at 969.368 kb on - strand, within Rru_A0813 at 969.455 kb on + strand, within Rru_A0813 at 969.455 kb on + strand, within Rru_A0813 at 969.455 kb on + strand, within Rru_A0813 at 969.487 kb on + strand, within Rru_A0813 at 969.488 kb on - strand, within Rru_A0813 at 969.488 kb on - strand, within Rru_A0813 at 969.496 kb on + strand, within Rru_A0813 at 969.496 kb on + strand, within Rru_A0813 at 969.496 kb on + strand, within Rru_A0813 at 969.497 kb on - strand, within Rru_A0813 at 969.497 kb on - strand, within Rru_A0813 at 969.517 kb on + strand, within Rru_A0813 at 969.518 kb on - strand, within Rru_A0813 at 969.533 kb on - strand, within Rru_A0813 at 969.879 kb on - strand at 969.933 kb on + strand at 969.933 kb on + strand at 969.934 kb on - strand at 969.941 kb on + strand at 969.991 kb on + strand, within Rru_A0814 at 970.076 kb on + strand, within Rru_A0814 at 970.076 kb on + strand, within Rru_A0814 at 970.077 kb on - strand, within Rru_A0814 at 970.078 kb on + strand, within Rru_A0814 at 970.078 kb on + strand, within Rru_A0814 at 970.078 kb on + strand, within Rru_A0814 at 970.078 kb on + strand, within Rru_A0814 at 970.078 kb on + strand, within Rru_A0814 at 970.078 kb on + strand, within Rru_A0814 at 970.078 kb on + strand, within Rru_A0814 at 970.079 kb on - strand, within Rru_A0814 at 970.079 kb on - strand, within Rru_A0814 at 970.079 kb on - strand, within Rru_A0814 at 970.079 kb on - strand, within Rru_A0814 at 970.079 kb on - strand, within Rru_A0814 at 970.079 kb on - strand, within Rru_A0814 at 970.191 kb on + strand, within Rru_A0814 at 970.218 kb on - strand, within Rru_A0814 at 970.258 kb on + strand, within Rru_A0814 at 970.259 kb on - strand, within Rru_A0814 at 970.276 kb on - strand, within Rru_A0814 at 970.276 kb on - strand, within Rru_A0814 at 970.294 kb on + strand, within Rru_A0814 at 970.295 kb on - strand, within Rru_A0814 at 970.372 kb on + strand, within Rru_A0814 at 970.373 kb on - strand, within Rru_A0814 at 970.393 kb on + strand at 970.393 kb on + strand at 970.393 kb on + strand at 970.394 kb on - strand at 970.394 kb on - strand at 970.396 kb on + strand at 970.747 kb on - strand, within Rru_A0815 at 970.840 kb on - strand at 970.933 kb on - strand at 971.124 kb on - strand, within Rru_A0816 at 971.151 kb on + strand, within Rru_A0816 at 971.151 kb on + strand, within Rru_A0816 at 971.152 kb on - strand, within Rru_A0816
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 969,061 + Rru_A0813 0.26 -0.2 969,061 + Rru_A0813 0.26 +0.3 969,061 + Rru_A0813 0.26 -0.3 969,062 - Rru_A0813 0.26 +0.6 969,274 + Rru_A0813 0.51 +0.1 969,275 - Rru_A0813 0.51 -0.3 969,275 - Rru_A0813 0.51 -0.2 969,367 + Rru_A0813 0.62 -0.3 969,367 + Rru_A0813 0.62 -0.2 969,368 - Rru_A0813 0.62 +0.1 969,455 + Rru_A0813 0.72 -0.8 969,455 + Rru_A0813 0.72 +0.8 969,455 + Rru_A0813 0.72 -0.1 969,487 + Rru_A0813 0.76 -0.2 969,488 - Rru_A0813 0.76 +0.1 969,488 - Rru_A0813 0.76 +0.1 969,496 + Rru_A0813 0.77 +0.1 969,496 + Rru_A0813 0.77 +0.2 969,496 + Rru_A0813 0.77 -0.2 969,497 - Rru_A0813 0.77 -0.3 969,497 - Rru_A0813 0.77 -0.2 969,517 + Rru_A0813 0.80 -0.3 969,518 - Rru_A0813 0.80 -0.6 969,533 - Rru_A0813 0.82 +1.1 969,879 - -0.6 969,933 + -0.2 969,933 + +0.1 969,934 - -0.2 969,941 + -0.3 969,991 + Rru_A0814 0.15 -0.0 970,076 + Rru_A0814 0.31 +2.1 970,076 + Rru_A0814 0.31 -0.2 970,077 - Rru_A0814 0.31 +0.1 970,078 + Rru_A0814 0.32 -0.0 970,078 + Rru_A0814 0.32 +0.0 970,078 + Rru_A0814 0.32 -0.2 970,078 + Rru_A0814 0.32 -0.7 970,078 + Rru_A0814 0.32 -0.2 970,078 + Rru_A0814 0.32 +0.7 970,078 + Rru_A0814 0.32 -0.5 970,079 - Rru_A0814 0.32 +0.4 970,079 - Rru_A0814 0.32 +0.3 970,079 - Rru_A0814 0.32 +0.3 970,079 - Rru_A0814 0.32 +0.5 970,079 - Rru_A0814 0.32 +0.6 970,079 - Rru_A0814 0.32 -1.4 970,191 + Rru_A0814 0.53 +0.2 970,218 - Rru_A0814 0.58 +0.4 970,258 + Rru_A0814 0.66 +0.5 970,259 - Rru_A0814 0.66 +0.4 970,276 - Rru_A0814 0.69 +0.5 970,276 - Rru_A0814 0.69 +0.4 970,294 + Rru_A0814 0.73 +0.3 970,295 - Rru_A0814 0.73 -0.5 970,372 + Rru_A0814 0.88 -0.3 970,373 - Rru_A0814 0.88 -0.5 970,393 + +0.0 970,393 + +0.6 970,393 + +0.5 970,394 - +1.5 970,394 - +0.3 970,396 + +0.1 970,747 - Rru_A0815 0.84 -1.6 970,840 - -0.2 970,933 - -0.9 971,124 - Rru_A0816 0.11 +0.1 971,151 + Rru_A0816 0.12 +0.1 971,151 + Rru_A0816 0.12 +0.0 971,152 - Rru_A0816 0.12 +0.4
Or see this region's nucleotide sequence