Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0779

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0777 and Rru_A0778 overlap by 4 nucleotidesRru_A0778 and Rru_A0779 are separated by 145 nucleotidesRru_A0779 and Rru_A0780 are separated by 3 nucleotides Rru_A0777: Rru_A0777 - D-lactate dehydrogenase (cytochrome) (NCBI), at 928,695 to 930,143 _A0777 Rru_A0778: Rru_A0778 - Lipoprotein YaeC (NCBI), at 930,140 to 930,946 _A0778 Rru_A0779: Rru_A0779 - extracellular solute-binding protein, family 3 (NCBI), at 931,092 to 932,144 _A0779 Rru_A0780: Rru_A0780 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 932,148 to 933,311 _A0780 Position (kb) 931 932 933Strain fitness (log2 ratio) -1 0 1at 930.225 kb on + strand, within Rru_A0778at 930.408 kb on - strand, within Rru_A0778at 930.408 kb on - strand, within Rru_A0778at 930.437 kb on + strand, within Rru_A0778at 930.437 kb on + strand, within Rru_A0778at 930.438 kb on - strand, within Rru_A0778at 930.438 kb on - strand, within Rru_A0778at 930.485 kb on + strand, within Rru_A0778at 930.534 kb on + strand, within Rru_A0778at 930.535 kb on - strand, within Rru_A0778at 930.535 kb on - strand, within Rru_A0778at 930.743 kb on + strand, within Rru_A0778at 930.744 kb on - strand, within Rru_A0778at 930.744 kb on - strand, within Rru_A0778at 930.809 kb on + strand, within Rru_A0778at 930.810 kb on - strand, within Rru_A0778at 930.810 kb on - strand, within Rru_A0778at 930.810 kb on - strand, within Rru_A0778at 930.928 kb on + strandat 930.928 kb on + strandat 930.928 kb on + strandat 930.929 kb on - strandat 931.006 kb on + strandat 931.034 kb on + strandat 931.419 kb on - strand, within Rru_A0779at 931.625 kb on + strand, within Rru_A0779at 931.626 kb on - strand, within Rru_A0779at 931.764 kb on + strand, within Rru_A0779at 931.764 kb on + strand, within Rru_A0779at 931.764 kb on + strand, within Rru_A0779at 931.860 kb on + strand, within Rru_A0779at 931.860 kb on + strand, within Rru_A0779at 931.860 kb on + strand, within Rru_A0779at 931.861 kb on - strand, within Rru_A0779at 931.861 kb on - strand, within Rru_A0779at 931.928 kb on + strand, within Rru_A0779at 931.929 kb on - strand, within Rru_A0779at 931.929 kb on - strand, within Rru_A0779at 932.004 kb on + strand, within Rru_A0779at 932.005 kb on - strand, within Rru_A0779at 932.005 kb on - strand, within Rru_A0779at 932.007 kb on - strand, within Rru_A0779at 932.007 kb on - strand, within Rru_A0779at 932.007 kb on - strand, within Rru_A0779at 932.094 kb on - strandat 932.125 kb on - strandat 932.171 kb on - strandat 932.171 kb on - strandat 932.268 kb on - strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.361 kb on + strand, within Rru_A0780at 932.362 kb on - strand, within Rru_A0780at 932.362 kb on - strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.363 kb on + strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.364 kb on - strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.379 kb on + strand, within Rru_A0780at 932.380 kb on - strand, within Rru_A0780at 932.520 kb on + strand, within Rru_A0780at 932.520 kb on + strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.521 kb on - strand, within Rru_A0780at 932.541 kb on - strand, within Rru_A0780at 932.652 kb on + strand, within Rru_A0780at 932.652 kb on + strand, within Rru_A0780at 932.652 kb on + strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.653 kb on - strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 932.654 kb on + strand, within Rru_A0780at 933.111 kb on + strand, within Rru_A0780

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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930,225 + Rru_A0778 0.11 +0.2
930,408 - Rru_A0778 0.33 +1.0
930,408 - Rru_A0778 0.33 -0.7
930,437 + Rru_A0778 0.37 +0.4
930,437 + Rru_A0778 0.37 -0.1
930,438 - Rru_A0778 0.37 -0.3
930,438 - Rru_A0778 0.37 -0.3
930,485 + Rru_A0778 0.43 -0.1
930,534 + Rru_A0778 0.49 -1.6
930,535 - Rru_A0778 0.49 -0.4
930,535 - Rru_A0778 0.49 +0.4
930,743 + Rru_A0778 0.75 -0.6
930,744 - Rru_A0778 0.75 +0.1
930,744 - Rru_A0778 0.75 +0.4
930,809 + Rru_A0778 0.83 -0.8
930,810 - Rru_A0778 0.83 -0.1
930,810 - Rru_A0778 0.83 -0.4
930,810 - Rru_A0778 0.83 +0.5
930,928 + +1.3
930,928 + -0.3
930,928 + -0.2
930,929 - +0.1
931,006 + -0.6
931,034 + +0.1
931,419 - Rru_A0779 0.31 +0.2
931,625 + Rru_A0779 0.51 +0.6
931,626 - Rru_A0779 0.51 -0.5
931,764 + Rru_A0779 0.64 -0.0
931,764 + Rru_A0779 0.64 +1.1
931,764 + Rru_A0779 0.64 +0.3
931,860 + Rru_A0779 0.73 -0.1
931,860 + Rru_A0779 0.73 +0.7
931,860 + Rru_A0779 0.73 -0.5
931,861 - Rru_A0779 0.73 -1.2
931,861 - Rru_A0779 0.73 +0.0
931,928 + Rru_A0779 0.79 +0.5
931,929 - Rru_A0779 0.79 +0.5
931,929 - Rru_A0779 0.79 +0.7
932,004 + Rru_A0779 0.87 -0.0
932,005 - Rru_A0779 0.87 +0.1
932,005 - Rru_A0779 0.87 +1.0
932,007 - Rru_A0779 0.87 +0.7
932,007 - Rru_A0779 0.87 -0.1
932,007 - Rru_A0779 0.87 -0.3
932,094 - -1.0
932,125 - -0.5
932,171 - +0.4
932,171 - -0.0
932,268 - Rru_A0780 0.10 -0.2
932,361 + Rru_A0780 0.18 +0.1
932,361 + Rru_A0780 0.18 +0.5
932,361 + Rru_A0780 0.18 -0.1
932,361 + Rru_A0780 0.18 +0.4
932,361 + Rru_A0780 0.18 -0.5
932,362 - Rru_A0780 0.18 -0.2
932,362 - Rru_A0780 0.18 +0.5
932,363 + Rru_A0780 0.18 -0.0
932,363 + Rru_A0780 0.18 +0.6
932,363 + Rru_A0780 0.18 -0.2
932,363 + Rru_A0780 0.18 +0.0
932,363 + Rru_A0780 0.18 +0.1
932,364 - Rru_A0780 0.19 +0.4
932,364 - Rru_A0780 0.19 -0.5
932,364 - Rru_A0780 0.19 +0.1
932,364 - Rru_A0780 0.19 +0.0
932,379 + Rru_A0780 0.20 +0.7
932,379 + Rru_A0780 0.20 +0.0
932,379 + Rru_A0780 0.20 -0.1
932,379 + Rru_A0780 0.20 -0.1
932,380 - Rru_A0780 0.20 -1.1
932,520 + Rru_A0780 0.32 -0.2
932,520 + Rru_A0780 0.32 +0.9
932,521 - Rru_A0780 0.32 -0.1
932,521 - Rru_A0780 0.32 +0.6
932,521 - Rru_A0780 0.32 -0.1
932,521 - Rru_A0780 0.32 -0.0
932,541 - Rru_A0780 0.34 +0.5
932,652 + Rru_A0780 0.43 -0.8
932,652 + Rru_A0780 0.43 +0.1
932,652 + Rru_A0780 0.43 -0.3
932,653 - Rru_A0780 0.43 -0.4
932,653 - Rru_A0780 0.43 -0.2
932,653 - Rru_A0780 0.43 -0.4
932,653 - Rru_A0780 0.43 -0.1
932,654 + Rru_A0780 0.43 +0.3
932,654 + Rru_A0780 0.43 -0.4
932,654 + Rru_A0780 0.43 +0.6
932,654 + Rru_A0780 0.43 -1.4
933,111 + Rru_A0780 0.83 +1.6

Or see this region's nucleotide sequence