Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0595 and Rru_A0596 are separated by 143 nucleotides Rru_A0596 and Rru_A0597 are separated by 295 nucleotides
Rru_A0595: Rru_A0595 - transketolase (NCBI), at 706,239 to 708,221
_A0595
Rru_A0596: Rru_A0596 - Fructose-bisphosphate aldolase, class II, Calvin cycle subtype (NCBI), at 708,365 to 709,429
_A0596
Rru_A0597: Rru_A0597 - Protein of unknown function DUF1526 (NCBI), at 709,725 to 710,399
_A0597
Position (kb) 708
709
710 Strain fitness (log2 ratio) -2
-1
0
1 at 708.285 kb on + strand at 708.286 kb on - strand at 708.286 kb on - strand at 708.286 kb on - strand at 708.343 kb on + strand at 708.345 kb on + strand at 708.345 kb on + strand at 708.345 kb on + strand at 708.346 kb on - strand at 708.346 kb on - strand at 708.349 kb on + strand at 708.349 kb on + strand at 708.581 kb on + strand, within Rru_A0596 at 708.619 kb on + strand, within Rru_A0596 at 708.619 kb on + strand, within Rru_A0596 at 708.717 kb on - strand, within Rru_A0596 at 708.717 kb on - strand, within Rru_A0596 at 708.722 kb on + strand, within Rru_A0596 at 708.723 kb on - strand, within Rru_A0596 at 708.723 kb on - strand, within Rru_A0596 at 708.728 kb on + strand, within Rru_A0596 at 709.043 kb on - strand, within Rru_A0596 at 709.130 kb on + strand, within Rru_A0596 at 709.131 kb on - strand, within Rru_A0596 at 709.274 kb on + strand, within Rru_A0596 at 709.427 kb on + strand at 709.427 kb on + strand at 709.443 kb on - strand at 709.456 kb on + strand at 709.782 kb on + strand at 709.782 kb on + strand at 709.836 kb on + strand, within Rru_A0597 at 709.837 kb on - strand, within Rru_A0597 at 709.837 kb on - strand, within Rru_A0597 at 709.840 kb on + strand, within Rru_A0597 at 709.840 kb on + strand, within Rru_A0597 at 709.840 kb on + strand, within Rru_A0597 at 709.841 kb on - strand, within Rru_A0597 at 709.841 kb on - strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.883 kb on + strand, within Rru_A0597 at 709.884 kb on - strand, within Rru_A0597 at 709.924 kb on + strand, within Rru_A0597 at 709.935 kb on + strand, within Rru_A0597 at 709.935 kb on + strand, within Rru_A0597 at 710.000 kb on + strand, within Rru_A0597 at 710.147 kb on - strand, within Rru_A0597 at 710.290 kb on + strand, within Rru_A0597 at 710.299 kb on + strand, within Rru_A0597 at 710.300 kb on - strand, within Rru_A0597 at 710.300 kb on - strand, within Rru_A0597 at 710.300 kb on - strand, within Rru_A0597
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 708,285 + +1.5 708,286 - -1.2 708,286 - +0.1 708,286 - +1.1 708,343 + +0.2 708,345 + -0.5 708,345 + +0.4 708,345 + +0.3 708,346 - +0.3 708,346 - -0.3 708,349 + -0.6 708,349 + +0.2 708,581 + Rru_A0596 0.20 -0.8 708,619 + Rru_A0596 0.24 -0.1 708,619 + Rru_A0596 0.24 -0.5 708,717 - Rru_A0596 0.33 -2.3 708,717 - Rru_A0596 0.33 -1.3 708,722 + Rru_A0596 0.34 +0.9 708,723 - Rru_A0596 0.34 -0.1 708,723 - Rru_A0596 0.34 -0.7 708,728 + Rru_A0596 0.34 -1.1 709,043 - Rru_A0596 0.64 +0.5 709,130 + Rru_A0596 0.72 -0.1 709,131 - Rru_A0596 0.72 -0.0 709,274 + Rru_A0596 0.85 -0.5 709,427 + -0.2 709,427 + -1.3 709,443 - -0.5 709,456 + -0.4 709,782 + -0.0 709,782 + -0.1 709,836 + Rru_A0597 0.16 -0.1 709,837 - Rru_A0597 0.17 -0.7 709,837 - Rru_A0597 0.17 -0.1 709,840 + Rru_A0597 0.17 +0.2 709,840 + Rru_A0597 0.17 +0.1 709,840 + Rru_A0597 0.17 -0.3 709,841 - Rru_A0597 0.17 -0.1 709,841 - Rru_A0597 0.17 +0.2 709,883 + Rru_A0597 0.23 +1.5 709,883 + Rru_A0597 0.23 -0.1 709,883 + Rru_A0597 0.23 -0.3 709,883 + Rru_A0597 0.23 +0.7 709,883 + Rru_A0597 0.23 -0.2 709,884 - Rru_A0597 0.24 -1.0 709,924 + Rru_A0597 0.29 +0.2 709,935 + Rru_A0597 0.31 +0.3 709,935 + Rru_A0597 0.31 -0.6 710,000 + Rru_A0597 0.41 +0.4 710,147 - Rru_A0597 0.63 +0.1 710,290 + Rru_A0597 0.84 +0.1 710,299 + Rru_A0597 0.85 -0.4 710,300 - Rru_A0597 0.85 +0.2 710,300 - Rru_A0597 0.85 +0.5 710,300 - Rru_A0597 0.85 +0.0
Or see this region's nucleotide sequence