Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0553

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0551 and Rru_A0552 overlap by 122 nucleotidesRru_A0552 and Rru_A0553 are separated by 264 nucleotidesRru_A0553 and Rru_A0554 are separated by 175 nucleotides Rru_A0551: Rru_A0551 - TPR domain protein (NCBI), at 651,316 to 652,941 _A0551 Rru_A0552: Rru_A0552 - GCN5-related N-acetyltransferase (NCBI), at 652,820 to 653,449 _A0552 Rru_A0553: Rru_A0553 - Response Regulator Receiver Signal Transduction Histidine Kinase (NCBI), at 653,714 to 655,036 _A0553 Rru_A0554: Rru_A0554 - Rh-like protein/ammonium transporter (NCBI), at 655,212 to 656,531 _A0554 Position (kb) 653 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2at 652.761 kb on - strand, within Rru_A0551at 652.761 kb on - strand, within Rru_A0551at 652.821 kb on + strandat 652.821 kb on + strandat 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.246 kb on - strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.247 kb on + strand, within Rru_A0552at 653.248 kb on - strand, within Rru_A0552at 653.248 kb on - strand, within Rru_A0552at 653.485 kb on + strandat 653.485 kb on + strandat 653.485 kb on + strandat 653.486 kb on - strandat 653.486 kb on - strandat 653.537 kb on + strandat 653.537 kb on + strandat 653.568 kb on + strandat 653.568 kb on + strandat 653.569 kb on - strandat 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.319 kb on + strand, within Rru_A0553at 654.320 kb on - strand, within Rru_A0553at 654.320 kb on - strand, within Rru_A0553at 654.320 kb on - strand, within Rru_A0553at 654.321 kb on + strand, within Rru_A0553at 654.322 kb on - strand, within Rru_A0553at 654.555 kb on + strand, within Rru_A0553at 654.556 kb on - strand, within Rru_A0553at 654.556 kb on - strand, within Rru_A0553at 654.556 kb on - strand, within Rru_A0553at 654.621 kb on + strand, within Rru_A0553at 654.637 kb on - strand, within Rru_A0553at 655.084 kb on - strandat 655.179 kb on - strandat 655.213 kb on + strandat 655.687 kb on + strand, within Rru_A0554at 655.687 kb on + strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.805 kb on + strand, within Rru_A0554at 655.806 kb on - strand, within Rru_A0554at 655.806 kb on - strand, within Rru_A0554

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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652,761 - Rru_A0551 0.89 -0.5
652,761 - Rru_A0551 0.89 -0.4
652,821 + -0.1
652,821 + +0.7
653,246 - Rru_A0552 0.68 -0.0
653,246 - Rru_A0552 0.68 -0.1
653,246 - Rru_A0552 0.68 -0.2
653,246 - Rru_A0552 0.68 +0.7
653,246 - Rru_A0552 0.68 -0.3
653,246 - Rru_A0552 0.68 -0.2
653,246 - Rru_A0552 0.68 +2.2
653,247 + Rru_A0552 0.68 -0.0
653,247 + Rru_A0552 0.68 -0.1
653,247 + Rru_A0552 0.68 -0.5
653,247 + Rru_A0552 0.68 +0.1
653,247 + Rru_A0552 0.68 -1.0
653,247 + Rru_A0552 0.68 -0.1
653,247 + Rru_A0552 0.68 +0.8
653,247 + Rru_A0552 0.68 +0.8
653,247 + Rru_A0552 0.68 -0.4
653,248 - Rru_A0552 0.68 +0.3
653,248 - Rru_A0552 0.68 +0.3
653,485 + -0.4
653,485 + +0.0
653,485 + -0.0
653,486 - +0.1
653,486 - +0.0
653,537 + -0.4
653,537 + -0.2
653,568 + -0.3
653,568 + -0.4
653,569 - +0.5
654,319 + Rru_A0553 0.46 +0.7
654,319 + Rru_A0553 0.46 -0.9
654,319 + Rru_A0553 0.46 +1.1
654,319 + Rru_A0553 0.46 -0.9
654,319 + Rru_A0553 0.46 -0.5
654,319 + Rru_A0553 0.46 +0.5
654,319 + Rru_A0553 0.46 +0.5
654,319 + Rru_A0553 0.46 -0.1
654,320 - Rru_A0553 0.46 -0.3
654,320 - Rru_A0553 0.46 +0.1
654,320 - Rru_A0553 0.46 -0.4
654,321 + Rru_A0553 0.46 -0.0
654,322 - Rru_A0553 0.46 -0.2
654,555 + Rru_A0553 0.64 +1.0
654,556 - Rru_A0553 0.64 +1.5
654,556 - Rru_A0553 0.64 +0.1
654,556 - Rru_A0553 0.64 +0.3
654,621 + Rru_A0553 0.69 +1.8
654,637 - Rru_A0553 0.70 -0.2
655,084 - +0.2
655,179 - +1.5
655,213 + -0.6
655,687 + Rru_A0554 0.36 +0.1
655,687 + Rru_A0554 0.36 -1.1
655,688 - Rru_A0554 0.36 +0.3
655,688 - Rru_A0554 0.36 -0.4
655,688 - Rru_A0554 0.36 -0.7
655,688 - Rru_A0554 0.36 -2.5
655,805 + Rru_A0554 0.45 +0.2
655,806 - Rru_A0554 0.45 -0.1
655,806 - Rru_A0554 0.45 -0.5

Or see this region's nucleotide sequence