Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0484

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0482 and Rru_A0483 are separated by 355 nucleotidesRru_A0483 and Rru_A0484 are separated by 7 nucleotidesRru_A0484 and Rru_A0485 are separated by 419 nucleotides Rru_A0482: Rru_A0482 - Protein of unknown function DUF1311 (NCBI), at 566,184 to 566,864 _A0482 Rru_A0483: Rru_A0483 - hypothetical protein (NCBI), at 567,220 to 567,480 _A0483 Rru_A0484: Rru_A0484 - hypothetical protein (NCBI), at 567,488 to 568,483 _A0484 Rru_A0485: Rru_A0485 - Magnesium chelatase ATPase subunit I (NCBI), at 568,903 to 570,087 _A0485 Position (kb) 567 568 569Strain fitness (log2 ratio) -2 -1 0 1at 566.669 kb on - strand, within Rru_A0482at 566.669 kb on - strand, within Rru_A0482at 566.707 kb on - strand, within Rru_A0482at 566.810 kb on + strandat 566.810 kb on + strandat 566.811 kb on - strandat 566.811 kb on - strandat 566.840 kb on + strandat 566.840 kb on + strandat 566.841 kb on - strandat 566.841 kb on - strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.864 kb on + strandat 566.865 kb on - strandat 566.865 kb on - strandat 566.865 kb on - strandat 566.897 kb on - strandat 566.993 kb on - strandat 566.994 kb on + strandat 566.994 kb on + strandat 566.995 kb on - strandat 567.093 kb on + strandat 567.093 kb on + strandat 567.094 kb on - strandat 567.122 kb on - strandat 567.215 kb on - strandat 567.215 kb on - strandat 567.403 kb on + strand, within Rru_A0483at 567.404 kb on - strand, within Rru_A0483at 567.404 kb on - strand, within Rru_A0483at 567.432 kb on + strand, within Rru_A0483at 567.438 kb on - strand, within Rru_A0483at 567.630 kb on + strand, within Rru_A0484at 567.631 kb on - strand, within Rru_A0484at 567.631 kb on - strand, within Rru_A0484at 567.957 kb on + strand, within Rru_A0484at 568.027 kb on - strand, within Rru_A0484at 568.154 kb on - strand, within Rru_A0484at 568.154 kb on - strand, within Rru_A0484at 568.156 kb on - strand, within Rru_A0484at 568.218 kb on + strand, within Rru_A0484at 568.309 kb on + strand, within Rru_A0484at 568.309 kb on + strand, within Rru_A0484at 568.310 kb on - strand, within Rru_A0484at 568.312 kb on - strand, within Rru_A0484at 568.414 kb on - strandat 568.414 kb on - strandat 568.728 kb on + strandat 568.729 kb on - strandat 568.729 kb on - strandat 568.761 kb on + strandat 568.804 kb on + strandat 568.804 kb on + strandat 568.804 kb on + strandat 568.805 kb on - strandat 568.805 kb on - strandat 568.805 kb on - strandat 568.805 kb on - strandat 568.805 kb on - strandat 568.805 kb on - strandat 568.910 kb on + strandat 568.943 kb on + strandat 568.943 kb on + strandat 568.943 kb on + strandat 568.943 kb on + strandat 568.944 kb on - strandat 568.944 kb on - strandat 569.028 kb on - strand, within Rru_A0485at 569.185 kb on - strand, within Rru_A0485at 569.434 kb on + strand, within Rru_A0485at 569.435 kb on - strand, within Rru_A0485at 569.476 kb on + strand, within Rru_A0485at 569.476 kb on + strand, within Rru_A0485at 569.476 kb on + strand, within Rru_A0485at 569.477 kb on - strand, within Rru_A0485at 569.477 kb on - strand, within Rru_A0485at 569.477 kb on - strand, within Rru_A0485at 569.479 kb on - strand, within Rru_A0485

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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566,669 - Rru_A0482 0.71 -0.2
566,669 - Rru_A0482 0.71 -0.3
566,707 - Rru_A0482 0.77 +0.2
566,810 + -0.0
566,810 + -0.4
566,811 - +0.5
566,811 - +0.1
566,840 + +0.7
566,840 + -0.6
566,841 - +0.1
566,841 - +0.5
566,864 + -0.1
566,864 + -0.1
566,864 + -0.0
566,864 + +0.3
566,864 + -0.2
566,865 - -0.4
566,865 - -2.0
566,865 - -0.3
566,897 - -0.1
566,993 - +0.3
566,994 + +0.2
566,994 + -0.0
566,995 - -0.9
567,093 + -0.3
567,093 + -0.1
567,094 - +0.1
567,122 - +0.9
567,215 - +0.2
567,215 - -0.2
567,403 + Rru_A0483 0.70 +0.5
567,404 - Rru_A0483 0.70 -0.2
567,404 - Rru_A0483 0.70 -0.3
567,432 + Rru_A0483 0.81 +0.8
567,438 - Rru_A0483 0.84 -0.1
567,630 + Rru_A0484 0.14 -1.5
567,631 - Rru_A0484 0.14 +0.1
567,631 - Rru_A0484 0.14 -0.3
567,957 + Rru_A0484 0.47 -0.5
568,027 - Rru_A0484 0.54 -0.9
568,154 - Rru_A0484 0.67 +0.5
568,154 - Rru_A0484 0.67 -1.3
568,156 - Rru_A0484 0.67 -0.9
568,218 + Rru_A0484 0.73 -0.9
568,309 + Rru_A0484 0.82 -0.9
568,309 + Rru_A0484 0.82 -1.2
568,310 - Rru_A0484 0.83 +0.5
568,312 - Rru_A0484 0.83 -0.5
568,414 - +0.1
568,414 - +1.0
568,728 + -0.3
568,729 - -0.9
568,729 - -1.0
568,761 + -0.1
568,804 + -0.2
568,804 + -0.1
568,804 + +0.1
568,805 - +1.5
568,805 - +0.4
568,805 - -0.1
568,805 - -0.3
568,805 - +0.1
568,805 - +0.0
568,910 + -0.4
568,943 + +0.6
568,943 + +0.4
568,943 + -0.1
568,943 + -0.5
568,944 - -0.4
568,944 - +0.1
569,028 - Rru_A0485 0.11 -0.3
569,185 - Rru_A0485 0.24 +1.0
569,434 + Rru_A0485 0.45 -0.3
569,435 - Rru_A0485 0.45 +1.3
569,476 + Rru_A0485 0.48 +0.0
569,476 + Rru_A0485 0.48 +0.3
569,476 + Rru_A0485 0.48 -1.1
569,477 - Rru_A0485 0.48 +0.0
569,477 - Rru_A0485 0.48 +0.6
569,477 - Rru_A0485 0.48 +0.5
569,479 - Rru_A0485 0.49 -0.3

Or see this region's nucleotide sequence