Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0302

Experiment: SMN_rich_noKan

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0300 and Rru_A0301 are separated by 81 nucleotidesRru_A0301 and Rru_A0302 are separated by 169 nucleotidesRru_A0302 and Rru_A0303 are separated by 438 nucleotides Rru_A0300: Rru_A0300 - Aminotransferase, class IV (NCBI), at 367,184 to 368,038 _A0300 Rru_A0301: Rru_A0301 - Alkylhydroperoxidase AhpD core (NCBI), at 368,120 to 368,533 _A0301 Rru_A0302: Rru_A0302 - Hydrogenase accessory protein HypB (NCBI), at 368,703 to 369,593 _A0302 Rru_A0303: Rru_A0303 - hypothetical protein (NCBI), at 370,032 to 371,339 _A0303 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1at 367.933 kb on + strand, within Rru_A0300at 368.015 kb on + strandat 368.016 kb on - strandat 368.037 kb on - strandat 368.057 kb on + strandat 368.058 kb on - strandat 368.087 kb on + strandat 368.087 kb on + strandat 368.225 kb on - strand, within Rru_A0301at 368.339 kb on + strand, within Rru_A0301at 368.339 kb on + strand, within Rru_A0301at 368.339 kb on + strand, within Rru_A0301at 368.340 kb on - strand, within Rru_A0301at 368.340 kb on - strand, within Rru_A0301at 368.362 kb on + strand, within Rru_A0301at 368.362 kb on + strand, within Rru_A0301at 368.362 kb on + strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.372 kb on + strand, within Rru_A0301at 368.372 kb on + strand, within Rru_A0301at 368.372 kb on + strand, within Rru_A0301at 368.373 kb on - strand, within Rru_A0301at 368.532 kb on - strandat 368.611 kb on + strandat 368.612 kb on - strandat 369.212 kb on + strand, within Rru_A0302at 369.212 kb on + strand, within Rru_A0302at 369.212 kb on + strand, within Rru_A0302at 369.212 kb on + strand, within Rru_A0302at 369.212 kb on + strand, within Rru_A0302at 369.213 kb on - strand, within Rru_A0302at 369.213 kb on - strand, within Rru_A0302at 369.213 kb on - strand, within Rru_A0302at 369.605 kb on + strandat 369.605 kb on + strandat 369.605 kb on + strandat 369.605 kb on + strandat 369.606 kb on - strandat 369.668 kb on + strandat 369.669 kb on - strandat 369.670 kb on + strandat 369.670 kb on + strandat 369.671 kb on - strandat 369.671 kb on - strandat 369.844 kb on + strandat 369.844 kb on + strandat 369.845 kb on - strandat 369.845 kb on - strandat 369.845 kb on - strandat 369.845 kb on - strandat 369.846 kb on + strandat 369.891 kb on + strandat 369.891 kb on + strandat 369.891 kb on + strandat 369.892 kb on - strandat 369.892 kb on - strandat 369.892 kb on - strandat 369.914 kb on - strandat 369.945 kb on - strandat 370.028 kb on + strandat 370.029 kb on - strandat 370.078 kb on + strandat 370.083 kb on - strandat 370.173 kb on - strand, within Rru_A0303at 370.305 kb on + strand, within Rru_A0303at 370.391 kb on + strand, within Rru_A0303at 370.485 kb on + strand, within Rru_A0303at 370.522 kb on + strand, within Rru_A0303at 370.529 kb on - strand, within Rru_A0303

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
remove
367,933 + Rru_A0300 0.88 +0.1
368,015 + -0.3
368,016 - +0.5
368,037 - -0.0
368,057 + -0.5
368,058 - -0.4
368,087 + +0.9
368,087 + -0.4
368,225 - Rru_A0301 0.25 +0.7
368,339 + Rru_A0301 0.53 +0.1
368,339 + Rru_A0301 0.53 -0.3
368,339 + Rru_A0301 0.53 +1.4
368,340 - Rru_A0301 0.53 -0.7
368,340 - Rru_A0301 0.53 -0.8
368,362 + Rru_A0301 0.58 +0.2
368,362 + Rru_A0301 0.58 -0.7
368,362 + Rru_A0301 0.58 +0.5
368,363 - Rru_A0301 0.59 -0.2
368,363 - Rru_A0301 0.59 +0.9
368,363 - Rru_A0301 0.59 +0.4
368,363 - Rru_A0301 0.59 +0.0
368,363 - Rru_A0301 0.59 -0.5
368,372 + Rru_A0301 0.61 -0.1
368,372 + Rru_A0301 0.61 -0.8
368,372 + Rru_A0301 0.61 +0.2
368,373 - Rru_A0301 0.61 +0.5
368,532 - -1.4
368,611 + -0.2
368,612 - -0.2
369,212 + Rru_A0302 0.57 +0.4
369,212 + Rru_A0302 0.57 +1.1
369,212 + Rru_A0302 0.57 +0.6
369,212 + Rru_A0302 0.57 -0.2
369,212 + Rru_A0302 0.57 +0.5
369,213 - Rru_A0302 0.57 -0.5
369,213 - Rru_A0302 0.57 +1.5
369,213 - Rru_A0302 0.57 -0.2
369,605 + -0.5
369,605 + +0.5
369,605 + +0.5
369,605 + -0.3
369,606 - -0.1
369,668 + +1.1
369,669 - -0.2
369,670 + -1.0
369,670 + -0.2
369,671 - +0.3
369,671 - +0.3
369,844 + +0.3
369,844 + +0.5
369,845 - +0.5
369,845 - +0.1
369,845 - +0.2
369,845 - +0.1
369,846 + -0.4
369,891 + +0.4
369,891 + -0.2
369,891 + -2.1
369,892 - -1.3
369,892 - -0.2
369,892 - -0.5
369,914 - +1.0
369,945 - -0.1
370,028 + -1.4
370,029 - +0.1
370,078 + -0.5
370,083 - -0.4
370,173 - Rru_A0303 0.11 -0.2
370,305 + Rru_A0303 0.21 -0.1
370,391 + Rru_A0303 0.27 +0.1
370,485 + Rru_A0303 0.35 +0.4
370,522 + Rru_A0303 0.37 -0.0
370,529 - Rru_A0303 0.38 -0.2

Or see this region's nucleotide sequence