Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0237

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0235 and Rru_A0236 are separated by 293 nucleotidesRru_A0236 and Rru_A0237 are separated by 1 nucleotidesRru_A0237 and Rru_A0238 are separated by 99 nucleotidesRru_A0238 and Rru_A0239 are separated by 61 nucleotidesRru_A0239 and Rru_A0240 are separated by 12 nucleotides Rru_A0235: Rru_A0235 - preprotein translocase subunit SecA (RefSeq), at 290,261 to 292,951 _A0235 Rru_A0236: Rru_A0236 - Camphor resistance CrcB protein (NCBI), at 293,245 to 293,634 _A0236 Rru_A0237: Rru_A0237 - Protein of unknown function DUF190 (NCBI), at 293,636 to 293,992 _A0237 Rru_A0238: Rru_A0238 - hypothetical protein (NCBI), at 294,092 to 294,277 _A0238 Rru_A0239: Rru_A0239 - hypothetical protein (NCBI), at 294,339 to 294,563 _A0239 Rru_A0240: Rru_A0240 - NUDIX hydrolase (NCBI), at 294,576 to 295,127 _A0240 Position (kb) 293 294Strain fitness (log2 ratio) -2 -1 0 1 2at 292.922 kb on + strandat 292.922 kb on + strandat 292.922 kb on + strandat 292.922 kb on + strandat 292.922 kb on + strandat 293.026 kb on + strandat 293.066 kb on + strandat 293.066 kb on + strandat 293.067 kb on - strandat 293.080 kb on + strandat 293.231 kb on - strandat 293.231 kb on - strandat 293.251 kb on + strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.252 kb on - strandat 293.255 kb on + strandat 293.256 kb on - strandat 293.364 kb on + strand, within Rru_A0236at 293.364 kb on + strand, within Rru_A0236at 293.364 kb on + strand, within Rru_A0236at 293.478 kb on + strand, within Rru_A0236at 293.478 kb on + strand, within Rru_A0236at 293.479 kb on - strand, within Rru_A0236at 293.479 kb on - strand, within Rru_A0236at 293.630 kb on + strandat 293.631 kb on - strandat 293.690 kb on + strand, within Rru_A0237at 293.691 kb on - strand, within Rru_A0237at 293.691 kb on - strand, within Rru_A0237at 293.692 kb on + strand, within Rru_A0237at 294.054 kb on - strandat 294.071 kb on - strandat 294.163 kb on + strand, within Rru_A0238at 294.164 kb on - strand, within Rru_A0238at 294.164 kb on - strand, within Rru_A0238at 294.164 kb on - strand, within Rru_A0238at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.492 kb on + strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.493 kb on - strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.494 kb on + strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.495 kb on - strand, within Rru_A0239at 294.516 kb on + strand, within Rru_A0239at 294.518 kb on + strand, within Rru_A0239at 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.543 kb on + strandat 294.544 kb on - strandat 294.872 kb on + strand, within Rru_A0240at 294.872 kb on + strand, within Rru_A0240at 294.873 kb on - strand, within Rru_A0240at 294.874 kb on + strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.875 kb on - strand, within Rru_A0240at 294.894 kb on + strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.895 kb on - strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.896 kb on + strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.897 kb on - strand, within Rru_A0240at 294.930 kb on + strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240at 294.931 kb on - strand, within Rru_A0240

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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292,922 + -0.5
292,922 + -0.4
292,922 + -1.2
292,922 + -0.5
292,922 + -0.9
293,026 + -0.7
293,066 + -0.2
293,066 + -0.5
293,067 - -0.7
293,080 + -0.0
293,231 - -0.9
293,231 - -0.0
293,251 + -0.8
293,252 - -0.5
293,252 - +0.5
293,252 - -0.3
293,252 - -0.8
293,252 - +0.3
293,252 - -0.1
293,252 - +0.0
293,252 - -0.2
293,252 - +0.3
293,252 - +0.1
293,255 + -0.8
293,256 - +0.1
293,364 + Rru_A0236 0.31 +1.0
293,364 + Rru_A0236 0.31 -0.3
293,364 + Rru_A0236 0.31 +0.1
293,478 + Rru_A0236 0.60 -0.8
293,478 + Rru_A0236 0.60 -0.4
293,479 - Rru_A0236 0.60 +0.7
293,479 - Rru_A0236 0.60 +0.1
293,630 + +1.4
293,631 - -0.0
293,690 + Rru_A0237 0.15 -0.2
293,691 - Rru_A0237 0.15 +0.5
293,691 - Rru_A0237 0.15 +1.8
293,692 + Rru_A0237 0.16 -0.6
294,054 - -2.3
294,071 - -1.3
294,163 + Rru_A0238 0.38 -0.3
294,164 - Rru_A0238 0.39 +0.3
294,164 - Rru_A0238 0.39 +0.2
294,164 - Rru_A0238 0.39 -0.1
294,492 + Rru_A0239 0.68 -0.7
294,492 + Rru_A0239 0.68 +0.1
294,492 + Rru_A0239 0.68 -1.2
294,493 - Rru_A0239 0.68 -0.5
294,493 - Rru_A0239 0.68 -0.2
294,493 - Rru_A0239 0.68 +0.3
294,493 - Rru_A0239 0.68 -0.5
294,493 - Rru_A0239 0.68 -0.8
294,494 + Rru_A0239 0.69 +0.3
294,494 + Rru_A0239 0.69 -0.1
294,495 - Rru_A0239 0.69 -1.0
294,495 - Rru_A0239 0.69 -0.4
294,516 + Rru_A0239 0.79 -0.8
294,518 + Rru_A0239 0.80 +0.1
294,543 + +2.4
294,543 + -0.2
294,543 + +0.0
294,543 + -0.1
294,543 + +0.2
294,543 + -2.1
294,543 + -0.2
294,543 + -0.1
294,544 - -0.2
294,872 + Rru_A0240 0.54 -0.8
294,872 + Rru_A0240 0.54 -0.2
294,873 - Rru_A0240 0.54 -0.4
294,874 + Rru_A0240 0.54 -0.6
294,875 - Rru_A0240 0.54 +0.7
294,875 - Rru_A0240 0.54 +0.9
294,875 - Rru_A0240 0.54 +0.3
294,875 - Rru_A0240 0.54 -0.4
294,894 + Rru_A0240 0.58 +0.8
294,895 - Rru_A0240 0.58 -0.6
294,895 - Rru_A0240 0.58 +1.1
294,895 - Rru_A0240 0.58 -0.4
294,896 + Rru_A0240 0.58 -0.5
294,896 + Rru_A0240 0.58 +0.0
294,897 - Rru_A0240 0.58 -0.4
294,897 - Rru_A0240 0.58 -0.3
294,930 + Rru_A0240 0.64 -1.1
294,931 - Rru_A0240 0.64 +0.3
294,931 - Rru_A0240 0.64 -0.2
294,931 - Rru_A0240 0.64 -0.4
294,931 - Rru_A0240 0.64 +0.6

Or see this region's nucleotide sequence