Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0208

Experiment: SMN_rich_noKan

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0207 and Rru_A0208 are separated by 25 nucleotidesRru_A0208 and Rru_A0209 overlap by 17 nucleotides Rru_A0207: Rru_A0207 - Cobalt chelatase, CobT subunit (NCBI), at 256,107 to 258,008 _A0207 Rru_A0208: Rru_A0208 - SNF2 helicase-related protein (NCBI), at 258,034 to 261,663 _A0208 Rru_A0209: Rru_A0209 - Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B (NCBI), at 261,647 to 262,486 _A0209 Position (kb) 258 259 260 261 262Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 257.292 kb on + strand, within Rru_A0207at 257.293 kb on - strand, within Rru_A0207at 257.293 kb on - strand, within Rru_A0207at 257.293 kb on - strand, within Rru_A0207at 257.295 kb on - strand, within Rru_A0207at 257.305 kb on - strand, within Rru_A0207at 257.360 kb on + strand, within Rru_A0207at 257.562 kb on - strand, within Rru_A0207at 257.568 kb on + strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.569 kb on - strand, within Rru_A0207at 257.778 kb on + strand, within Rru_A0207at 258.106 kb on + strandat 258.106 kb on + strandat 258.107 kb on - strandat 258.107 kb on - strandat 258.107 kb on - strandat 258.129 kb on + strandat 258.129 kb on + strandat 258.130 kb on - strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.193 kb on + strandat 258.194 kb on - strandat 258.194 kb on - strandat 258.194 kb on - strandat 258.207 kb on + strandat 258.208 kb on - strandat 258.247 kb on + strandat 258.247 kb on + strandat 258.247 kb on + strandat 258.248 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.297 kb on - strandat 258.460 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.490 kb on + strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.491 kb on - strand, within Rru_A0208at 258.691 kb on + strand, within Rru_A0208at 258.692 kb on - strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.994 kb on + strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.995 kb on - strand, within Rru_A0208at 258.996 kb on + strand, within Rru_A0208at 258.996 kb on + strand, within Rru_A0208at 259.011 kb on + strand, within Rru_A0208at 259.168 kb on + strand, within Rru_A0208at 259.168 kb on + strand, within Rru_A0208at 259.169 kb on - strand, within Rru_A0208at 259.169 kb on - strand, within Rru_A0208at 259.169 kb on - strand, within Rru_A0208at 259.471 kb on + strand, within Rru_A0208at 259.990 kb on + strand, within Rru_A0208at 259.991 kb on - strand, within Rru_A0208at 260.278 kb on + strand, within Rru_A0208at 260.278 kb on + strand, within Rru_A0208at 260.323 kb on - strand, within Rru_A0208at 260.349 kb on + strand, within Rru_A0208at 260.350 kb on - strand, within Rru_A0208at 260.575 kb on + strand, within Rru_A0208at 260.575 kb on + strand, within Rru_A0208at 260.575 kb on + strand, within Rru_A0208at 260.576 kb on - strand, within Rru_A0208at 260.576 kb on - strand, within Rru_A0208at 260.576 kb on - strand, within Rru_A0208at 260.576 kb on - strand, within Rru_A0208at 260.576 kb on - strand, within Rru_A0208at 260.576 kb on - strand, within Rru_A0208at 260.576 kb on - strand, within Rru_A0208at 260.677 kb on + strand, within Rru_A0208at 260.677 kb on + strand, within Rru_A0208at 260.677 kb on + strand, within Rru_A0208at 260.678 kb on - strand, within Rru_A0208at 260.678 kb on - strand, within Rru_A0208at 260.678 kb on - strand, within Rru_A0208at 260.678 kb on - strand, within Rru_A0208at 260.678 kb on - strand, within Rru_A0208at 260.678 kb on - strand, within Rru_A0208at 260.956 kb on - strand, within Rru_A0208at 260.989 kb on + strand, within Rru_A0208at 260.990 kb on - strand, within Rru_A0208at 260.990 kb on - strand, within Rru_A0208at 261.015 kb on + strand, within Rru_A0208at 261.210 kb on + strand, within Rru_A0208at 261.424 kb on + strandat 261.424 kb on + strandat 261.424 kb on + strandat 261.424 kb on + strandat 261.424 kb on + strandat 261.424 kb on + strandat 261.425 kb on - strandat 261.492 kb on + strandat 261.792 kb on + strand, within Rru_A0209at 261.792 kb on + strand, within Rru_A0209at 261.792 kb on + strand, within Rru_A0209at 261.792 kb on + strand, within Rru_A0209at 261.792 kb on + strand, within Rru_A0209at 261.793 kb on - strand, within Rru_A0209at 261.793 kb on - strand, within Rru_A0209at 261.793 kb on - strand, within Rru_A0209at 261.793 kb on - strand, within Rru_A0209at 261.974 kb on - strand, within Rru_A0209at 262.404 kb on + strandat 262.405 kb on - strandat 262.405 kb on - strandat 262.506 kb on + strandat 262.507 kb on - strandat 262.580 kb on - strandat 262.580 kb on - strandat 262.580 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
remove
257,292 + Rru_A0207 0.62 +0.2
257,293 - Rru_A0207 0.62 -0.2
257,293 - Rru_A0207 0.62 +0.8
257,293 - Rru_A0207 0.62 +0.4
257,295 - Rru_A0207 0.62 -0.2
257,305 - Rru_A0207 0.63 -0.2
257,360 + Rru_A0207 0.66 -1.4
257,562 - Rru_A0207 0.76 +0.2
257,568 + Rru_A0207 0.77 +1.0
257,569 - Rru_A0207 0.77 +1.4
257,569 - Rru_A0207 0.77 +0.2
257,569 - Rru_A0207 0.77 -3.4
257,569 - Rru_A0207 0.77 -1.0
257,569 - Rru_A0207 0.77 -2.4
257,778 + Rru_A0207 0.88 -0.6
258,106 + +0.1
258,106 + -0.1
258,107 - +0.3
258,107 - +1.1
258,107 - +0.0
258,129 + +0.7
258,129 + +0.4
258,130 - -0.8
258,193 + -0.1
258,193 + +0.2
258,193 + +0.6
258,193 + +0.1
258,193 + -2.2
258,193 + +0.5
258,193 + +1.4
258,193 + -0.2
258,194 - +0.3
258,194 - +0.4
258,194 - -0.2
258,207 + +0.2
258,208 - +0.3
258,247 + -1.5
258,247 + -0.3
258,247 + -0.0
258,248 - +2.1
258,297 - +0.2
258,297 - +0.1
258,297 - +0.1
258,297 - +0.1
258,297 - -0.2
258,297 - +0.0
258,460 + Rru_A0208 0.12 +0.2
258,490 + Rru_A0208 0.13 +0.4
258,490 + Rru_A0208 0.13 +1.4
258,490 + Rru_A0208 0.13 +0.3
258,490 + Rru_A0208 0.13 +0.3
258,490 + Rru_A0208 0.13 +0.0
258,490 + Rru_A0208 0.13 +0.1
258,491 - Rru_A0208 0.13 +0.1
258,491 - Rru_A0208 0.13 +0.2
258,491 - Rru_A0208 0.13 +0.2
258,491 - Rru_A0208 0.13 +0.2
258,491 - Rru_A0208 0.13 -0.1
258,691 + Rru_A0208 0.18 +0.7
258,692 - Rru_A0208 0.18 +1.4
258,994 + Rru_A0208 0.26 +0.1
258,994 + Rru_A0208 0.26 -0.1
258,994 + Rru_A0208 0.26 -0.4
258,994 + Rru_A0208 0.26 +0.1
258,994 + Rru_A0208 0.26 -0.2
258,994 + Rru_A0208 0.26 -0.4
258,994 + Rru_A0208 0.26 +0.4
258,995 - Rru_A0208 0.26 +0.7
258,995 - Rru_A0208 0.26 +0.3
258,995 - Rru_A0208 0.26 -0.7
258,995 - Rru_A0208 0.26 +0.6
258,995 - Rru_A0208 0.26 +0.1
258,995 - Rru_A0208 0.26 -0.2
258,995 - Rru_A0208 0.26 -0.5
258,995 - Rru_A0208 0.26 -0.9
258,995 - Rru_A0208 0.26 -0.1
258,996 + Rru_A0208 0.27 -0.1
258,996 + Rru_A0208 0.27 +0.5
259,011 + Rru_A0208 0.27 -0.8
259,168 + Rru_A0208 0.31 +0.3
259,168 + Rru_A0208 0.31 -0.1
259,169 - Rru_A0208 0.31 -1.0
259,169 - Rru_A0208 0.31 +0.2
259,169 - Rru_A0208 0.31 +0.4
259,471 + Rru_A0208 0.40 +0.3
259,990 + Rru_A0208 0.54 +1.0
259,991 - Rru_A0208 0.54 +0.4
260,278 + Rru_A0208 0.62 -0.0
260,278 + Rru_A0208 0.62 +0.0
260,323 - Rru_A0208 0.63 +0.3
260,349 + Rru_A0208 0.64 +0.0
260,350 - Rru_A0208 0.64 -0.0
260,575 + Rru_A0208 0.70 +0.1
260,575 + Rru_A0208 0.70 -0.2
260,575 + Rru_A0208 0.70 -0.0
260,576 - Rru_A0208 0.70 -1.3
260,576 - Rru_A0208 0.70 +0.4
260,576 - Rru_A0208 0.70 -0.3
260,576 - Rru_A0208 0.70 +1.4
260,576 - Rru_A0208 0.70 +1.2
260,576 - Rru_A0208 0.70 +0.1
260,576 - Rru_A0208 0.70 -0.3
260,677 + Rru_A0208 0.73 -0.4
260,677 + Rru_A0208 0.73 +0.2
260,677 + Rru_A0208 0.73 +0.1
260,678 - Rru_A0208 0.73 +0.2
260,678 - Rru_A0208 0.73 -0.0
260,678 - Rru_A0208 0.73 -0.5
260,678 - Rru_A0208 0.73 +0.0
260,678 - Rru_A0208 0.73 +1.1
260,678 - Rru_A0208 0.73 +0.1
260,956 - Rru_A0208 0.80 +0.1
260,989 + Rru_A0208 0.81 -0.6
260,990 - Rru_A0208 0.81 -0.1
260,990 - Rru_A0208 0.81 -0.6
261,015 + Rru_A0208 0.82 +0.0
261,210 + Rru_A0208 0.87 -0.0
261,424 + -0.1
261,424 + +0.9
261,424 + -0.0
261,424 + +0.2
261,424 + +0.3
261,424 + +0.0
261,425 - -0.0
261,492 + +0.0
261,792 + Rru_A0209 0.17 +0.9
261,792 + Rru_A0209 0.17 +0.5
261,792 + Rru_A0209 0.17 -0.3
261,792 + Rru_A0209 0.17 -0.2
261,792 + Rru_A0209 0.17 -0.7
261,793 - Rru_A0209 0.17 -0.3
261,793 - Rru_A0209 0.17 +0.2
261,793 - Rru_A0209 0.17 +0.1
261,793 - Rru_A0209 0.17 -0.2
261,974 - Rru_A0209 0.39 +1.4
262,404 + +0.2
262,405 - -0.0
262,405 - +0.2
262,506 + +0.1
262,507 - +0.0
262,580 - +0.4
262,580 - +1.7
262,580 - -0.2

Or see this region's nucleotide sequence