Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0186

Experiment: SMN_rich_noKan

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0185 and Rru_A0186 overlap by 4 nucleotidesRru_A0186 and Rru_A0187 are separated by 596 nucleotides Rru_A0185: Rru_A0185 - hypothetical protein (NCBI), at 222,076 to 224,034 _A0185 Rru_A0186: Rru_A0186 - hypothetical protein (NCBI), at 224,031 to 225,704 _A0186 Rru_A0187: Rru_A0187 - hypothetical protein (NCBI), at 226,301 to 226,591 _A0187 Position (kb) 224 225 226Strain fitness (log2 ratio) -1 0 1 2at 223.276 kb on + strand, within Rru_A0185at 223.276 kb on + strand, within Rru_A0185at 223.277 kb on - strand, within Rru_A0185at 223.357 kb on + strand, within Rru_A0185at 224.071 kb on + strandat 224.072 kb on - strandat 224.211 kb on + strand, within Rru_A0186at 224.212 kb on - strand, within Rru_A0186at 224.253 kb on - strand, within Rru_A0186at 224.253 kb on - strand, within Rru_A0186at 224.330 kb on + strand, within Rru_A0186at 224.330 kb on + strand, within Rru_A0186at 224.330 kb on + strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.331 kb on - strand, within Rru_A0186at 224.465 kb on - strand, within Rru_A0186at 224.478 kb on + strand, within Rru_A0186at 224.478 kb on + strand, within Rru_A0186at 224.479 kb on - strand, within Rru_A0186at 224.479 kb on - strand, within Rru_A0186at 224.571 kb on + strand, within Rru_A0186at 224.571 kb on + strand, within Rru_A0186at 224.857 kb on - strand, within Rru_A0186at 224.946 kb on - strand, within Rru_A0186at 224.980 kb on + strand, within Rru_A0186at 225.032 kb on + strand, within Rru_A0186at 225.122 kb on - strand, within Rru_A0186at 225.122 kb on - strand, within Rru_A0186at 225.122 kb on - strand, within Rru_A0186at 225.122 kb on - strand, within Rru_A0186at 225.122 kb on - strand, within Rru_A0186at 225.281 kb on + strand, within Rru_A0186at 225.568 kb on + strandat 225.568 kb on + strandat 225.568 kb on + strandat 225.569 kb on - strandat 225.665 kb on + strandat 225.667 kb on + strandat 225.667 kb on + strandat 225.667 kb on + strandat 225.668 kb on - strandat 225.668 kb on - strandat 225.668 kb on - strandat 225.668 kb on - strandat 225.668 kb on - strandat 225.668 kb on - strandat 225.668 kb on - strandat 225.709 kb on + strandat 225.710 kb on - strandat 225.740 kb on + strandat 225.741 kb on - strandat 225.741 kb on - strandat 225.883 kb on + strandat 225.884 kb on - strandat 225.887 kb on + strandat 225.888 kb on - strandat 225.889 kb on + strandat 225.895 kb on + strandat 225.900 kb on + strandat 225.968 kb on - strandat 226.105 kb on + strandat 226.106 kb on - strandat 226.143 kb on - strandat 226.165 kb on - strandat 226.176 kb on - strandat 226.256 kb on + strandat 226.399 kb on - strand, within Rru_A0187at 226.413 kb on - strand, within Rru_A0187at 226.413 kb on - strand, within Rru_A0187at 226.413 kb on - strand, within Rru_A0187at 226.534 kb on + strand, within Rru_A0187at 226.589 kb on + strandat 226.594 kb on - strandat 226.676 kb on + strandat 226.676 kb on + strandat 226.677 kb on - strandat 226.677 kb on - strandat 226.681 kb on + strandat 226.681 kb on + strandat 226.681 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
remove
223,276 + Rru_A0185 0.61 -0.1
223,276 + Rru_A0185 0.61 -0.2
223,277 - Rru_A0185 0.61 +1.1
223,357 + Rru_A0185 0.65 -0.6
224,071 + +0.2
224,072 - +0.1
224,211 + Rru_A0186 0.11 +0.3
224,212 - Rru_A0186 0.11 -0.0
224,253 - Rru_A0186 0.13 +0.3
224,253 - Rru_A0186 0.13 +0.6
224,330 + Rru_A0186 0.18 -0.0
224,330 + Rru_A0186 0.18 +0.2
224,330 + Rru_A0186 0.18 -0.6
224,331 - Rru_A0186 0.18 -0.0
224,331 - Rru_A0186 0.18 +0.3
224,331 - Rru_A0186 0.18 -0.3
224,331 - Rru_A0186 0.18 +0.2
224,331 - Rru_A0186 0.18 -1.4
224,465 - Rru_A0186 0.26 +0.4
224,478 + Rru_A0186 0.27 -0.1
224,478 + Rru_A0186 0.27 -0.0
224,479 - Rru_A0186 0.27 +0.3
224,479 - Rru_A0186 0.27 -0.4
224,571 + Rru_A0186 0.32 +0.1
224,571 + Rru_A0186 0.32 +0.5
224,857 - Rru_A0186 0.49 +0.3
224,946 - Rru_A0186 0.55 +0.1
224,980 + Rru_A0186 0.57 -1.2
225,032 + Rru_A0186 0.60 +0.9
225,122 - Rru_A0186 0.65 +0.4
225,122 - Rru_A0186 0.65 -0.1
225,122 - Rru_A0186 0.65 +0.9
225,122 - Rru_A0186 0.65 -0.5
225,122 - Rru_A0186 0.65 +0.3
225,281 + Rru_A0186 0.75 +1.2
225,568 + -1.2
225,568 + +0.3
225,568 + -0.9
225,569 - -0.4
225,665 + +0.2
225,667 + +0.5
225,667 + -0.2
225,667 + -0.2
225,668 - +0.2
225,668 - +0.1
225,668 - -0.7
225,668 - -0.1
225,668 - -1.1
225,668 - +0.1
225,668 - +0.6
225,709 + -0.1
225,710 - -0.3
225,740 + -0.1
225,741 - +0.5
225,741 - -1.2
225,883 + -0.1
225,884 - -0.5
225,887 + -0.2
225,888 - -0.4
225,889 + -0.1
225,895 + +0.5
225,900 + -0.3
225,968 - -0.2
226,105 + -0.2
226,106 - -0.6
226,143 - +0.3
226,165 - -0.2
226,176 - -1.6
226,256 + -0.7
226,399 - Rru_A0187 0.34 +0.4
226,413 - Rru_A0187 0.38 +0.8
226,413 - Rru_A0187 0.38 -0.3
226,413 - Rru_A0187 0.38 -0.2
226,534 + Rru_A0187 0.80 -0.1
226,589 + -0.0
226,594 - +1.6
226,676 + -0.2
226,676 + -0.4
226,677 - +0.1
226,677 - +2.4
226,681 + +0.0
226,681 + -0.7
226,681 + -0.4

Or see this region's nucleotide sequence