Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0171

Experiment: SMN_rich_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0169 and Rru_A0170 are separated by 5 nucleotidesRru_A0170 and Rru_A0171 overlap by 4 nucleotidesRru_A0171 and Rru_A0172 are separated by 4 nucleotides Rru_A0169: Rru_A0169 - Protein of unknown function DUF48 (NCBI), at 200,286 to 201,227 _A0169 Rru_A0170: Rru_A0170 - CRISPR-associated protein, CT1974 (NCBI), at 201,233 to 201,895 _A0170 Rru_A0171: Rru_A0171 - CRISPR-associated protein, CT1976 (NCBI), at 201,892 to 202,677 _A0171 Rru_A0172: Rru_A0172 - CRISPR-associated protein, CT1975 (NCBI), at 202,682 to 203,761 _A0172 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1at 200.922 kb on + strand, within Rru_A0169at 200.922 kb on + strand, within Rru_A0169at 200.922 kb on + strand, within Rru_A0169at 200.923 kb on - strand, within Rru_A0169at 200.923 kb on - strand, within Rru_A0169at 200.923 kb on - strand, within Rru_A0169at 201.138 kb on + strandat 201.234 kb on + strandat 201.235 kb on - strandat 201.235 kb on - strandat 201.235 kb on - strandat 201.273 kb on + strandat 201.273 kb on + strandat 201.274 kb on - strandat 201.351 kb on + strand, within Rru_A0170at 201.352 kb on - strand, within Rru_A0170at 201.352 kb on - strand, within Rru_A0170at 201.352 kb on - strand, within Rru_A0170at 201.651 kb on + strand, within Rru_A0170at 201.651 kb on + strand, within Rru_A0170at 201.651 kb on + strand, within Rru_A0170at 201.651 kb on + strand, within Rru_A0170at 201.717 kb on + strand, within Rru_A0170at 201.718 kb on - strand, within Rru_A0170at 201.886 kb on + strandat 201.887 kb on - strandat 201.887 kb on - strandat 201.887 kb on - strandat 202.142 kb on + strand, within Rru_A0171at 202.142 kb on + strand, within Rru_A0171at 202.229 kb on + strand, within Rru_A0171at 202.337 kb on + strand, within Rru_A0171at 202.442 kb on + strand, within Rru_A0171at 202.443 kb on - strand, within Rru_A0171at 202.555 kb on + strand, within Rru_A0171at 202.683 kb on + strandat 202.683 kb on + strandat 202.684 kb on - strandat 202.794 kb on + strand, within Rru_A0172at 202.794 kb on + strand, within Rru_A0172at 202.794 kb on + strand, within Rru_A0172at 202.795 kb on - strand, within Rru_A0172at 202.795 kb on - strand, within Rru_A0172at 203.091 kb on + strand, within Rru_A0172at 203.091 kb on + strand, within Rru_A0172at 203.091 kb on + strand, within Rru_A0172at 203.092 kb on - strand, within Rru_A0172at 203.092 kb on - strand, within Rru_A0172at 203.098 kb on - strand, within Rru_A0172at 203.098 kb on - strand, within Rru_A0172at 203.190 kb on + strand, within Rru_A0172at 203.190 kb on + strand, within Rru_A0172at 203.190 kb on + strand, within Rru_A0172at 203.190 kb on + strand, within Rru_A0172at 203.191 kb on - strand, within Rru_A0172at 203.191 kb on - strand, within Rru_A0172at 203.191 kb on - strand, within Rru_A0172at 203.191 kb on - strand, within Rru_A0172at 203.193 kb on + strand, within Rru_A0172at 203.193 kb on + strand, within Rru_A0172at 203.193 kb on + strand, within Rru_A0172at 203.194 kb on - strand, within Rru_A0172

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_noKan
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200,922 + Rru_A0169 0.68 +0.1
200,922 + Rru_A0169 0.68 -0.5
200,922 + Rru_A0169 0.68 -1.0
200,923 - Rru_A0169 0.68 -0.1
200,923 - Rru_A0169 0.68 +0.1
200,923 - Rru_A0169 0.68 +0.9
201,138 + -0.2
201,234 + +0.3
201,235 - -0.1
201,235 - +0.0
201,235 - +0.1
201,273 + -0.6
201,273 + +0.0
201,274 - -0.4
201,351 + Rru_A0170 0.18 -0.3
201,352 - Rru_A0170 0.18 -0.1
201,352 - Rru_A0170 0.18 +0.0
201,352 - Rru_A0170 0.18 +0.5
201,651 + Rru_A0170 0.63 -0.8
201,651 + Rru_A0170 0.63 +0.6
201,651 + Rru_A0170 0.63 -0.1
201,651 + Rru_A0170 0.63 -0.2
201,717 + Rru_A0170 0.73 +0.4
201,718 - Rru_A0170 0.73 -0.2
201,886 + -0.2
201,887 - +0.1
201,887 - -0.1
201,887 - +0.2
202,142 + Rru_A0171 0.32 -0.4
202,142 + Rru_A0171 0.32 -0.2
202,229 + Rru_A0171 0.43 +0.2
202,337 + Rru_A0171 0.57 +0.5
202,442 + Rru_A0171 0.70 +0.6
202,443 - Rru_A0171 0.70 -0.1
202,555 + Rru_A0171 0.84 +1.1
202,683 + -0.1
202,683 + +0.3
202,684 - +0.1
202,794 + Rru_A0172 0.10 -2.4
202,794 + Rru_A0172 0.10 +0.4
202,794 + Rru_A0172 0.10 -0.2
202,795 - Rru_A0172 0.10 -0.0
202,795 - Rru_A0172 0.10 -1.0
203,091 + Rru_A0172 0.38 +0.0
203,091 + Rru_A0172 0.38 +0.4
203,091 + Rru_A0172 0.38 +0.5
203,092 - Rru_A0172 0.38 +0.2
203,092 - Rru_A0172 0.38 -0.3
203,098 - Rru_A0172 0.39 +0.5
203,098 - Rru_A0172 0.39 +0.1
203,190 + Rru_A0172 0.47 +0.0
203,190 + Rru_A0172 0.47 -0.7
203,190 + Rru_A0172 0.47 +0.5
203,190 + Rru_A0172 0.47 +0.3
203,191 - Rru_A0172 0.47 -0.2
203,191 - Rru_A0172 0.47 +0.2
203,191 - Rru_A0172 0.47 -0.1
203,191 - Rru_A0172 0.47 -0.5
203,193 + Rru_A0172 0.47 -0.4
203,193 + Rru_A0172 0.47 +0.6
203,193 + Rru_A0172 0.47 +0.0
203,194 - Rru_A0172 0.47 -0.2

Or see this region's nucleotide sequence