Experiment: SMN_rich_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0080 and Rru_A0081 are separated by 283 nucleotides Rru_A0081 and Rru_A0082 are separated by 788 nucleotides
Rru_A0080: Rru_A0080 - chemotaxis sensory transducer (NCBI), at 91,792 to 92,880
_A0080
Rru_A0081: Rru_A0081 - chemotaxis sensory transducer (NCBI), at 93,164 to 94,252
_A0081
Rru_A0082: Rru_A0082 - chemotaxis sensory transducer (NCBI), at 95,041 to 96,120
_A0082
Position (kb) 93
94
95 Strain fitness (log2 ratio) -2
-1
0
1
2 at 92.202 kb on - strand, within Rru_A0080 at 92.339 kb on + strand, within Rru_A0080 at 92.340 kb on - strand, within Rru_A0080 at 92.346 kb on + strand, within Rru_A0080 at 92.347 kb on - strand, within Rru_A0080 at 92.348 kb on + strand, within Rru_A0080 at 92.348 kb on + strand, within Rru_A0080 at 92.349 kb on - strand, within Rru_A0080 at 92.413 kb on + strand, within Rru_A0080 at 92.414 kb on - strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.472 kb on - strand, within Rru_A0080 at 92.596 kb on + strand, within Rru_A0080 at 92.597 kb on - strand, within Rru_A0080 at 92.900 kb on + strand at 92.901 kb on - strand at 92.967 kb on + strand at 92.967 kb on + strand at 93.043 kb on + strand at 93.149 kb on + strand at 93.150 kb on - strand at 93.196 kb on - strand at 93.213 kb on + strand at 93.213 kb on + strand at 93.270 kb on + strand at 93.270 kb on + strand at 93.273 kb on + strand, within Rru_A0081 at 93.274 kb on - strand, within Rru_A0081 at 93.328 kb on + strand, within Rru_A0081 at 93.328 kb on + strand, within Rru_A0081 at 93.516 kb on + strand, within Rru_A0081 at 93.516 kb on + strand, within Rru_A0081 at 93.516 kb on + strand, within Rru_A0081 at 93.517 kb on - strand, within Rru_A0081 at 93.543 kb on - strand, within Rru_A0081 at 93.573 kb on + strand, within Rru_A0081 at 93.573 kb on + strand, within Rru_A0081 at 93.573 kb on + strand, within Rru_A0081 at 93.573 kb on + strand, within Rru_A0081 at 93.574 kb on - strand, within Rru_A0081 at 93.711 kb on + strand, within Rru_A0081 at 93.711 kb on + strand, within Rru_A0081 at 93.712 kb on - strand, within Rru_A0081 at 93.712 kb on - strand, within Rru_A0081 at 93.712 kb on - strand, within Rru_A0081 at 93.712 kb on - strand, within Rru_A0081 at 93.719 kb on - strand, within Rru_A0081 at 93.719 kb on - strand, within Rru_A0081 at 93.720 kb on + strand, within Rru_A0081 at 93.721 kb on - strand, within Rru_A0081 at 93.721 kb on - strand, within Rru_A0081 at 94.091 kb on + strand, within Rru_A0081 at 94.273 kb on - strand at 94.414 kb on + strand at 94.415 kb on - strand at 94.480 kb on - strand at 94.576 kb on + strand at 94.687 kb on + strand at 94.687 kb on + strand at 94.687 kb on + strand at 94.688 kb on - strand at 94.688 kb on - strand at 94.688 kb on - strand at 94.886 kb on + strand at 94.886 kb on + strand at 94.886 kb on + strand at 94.887 kb on - strand at 94.909 kb on + strand at 94.909 kb on + strand at 94.909 kb on + strand at 94.909 kb on + strand at 94.910 kb on - strand at 94.910 kb on - strand at 95.042 kb on + strand at 95.055 kb on - strand at 95.072 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.091 kb on - strand at 95.091 kb on - strand at 95.091 kb on - strand at 95.091 kb on - strand at 95.091 kb on - strand at 95.099 kb on + strand at 95.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_noKan remove 92,202 - Rru_A0080 0.38 +0.0 92,339 + Rru_A0080 0.50 +0.4 92,340 - Rru_A0080 0.50 -0.6 92,346 + Rru_A0080 0.51 -1.8 92,347 - Rru_A0080 0.51 -0.1 92,348 + Rru_A0080 0.51 -0.1 92,348 + Rru_A0080 0.51 -0.4 92,349 - Rru_A0080 0.51 +1.4 92,413 + Rru_A0080 0.57 -0.4 92,414 - Rru_A0080 0.57 +0.1 92,471 + Rru_A0080 0.62 +1.1 92,471 + Rru_A0080 0.62 +0.4 92,471 + Rru_A0080 0.62 -0.2 92,471 + Rru_A0080 0.62 -0.1 92,471 + Rru_A0080 0.62 +0.4 92,471 + Rru_A0080 0.62 -0.3 92,472 - Rru_A0080 0.62 -0.5 92,596 + Rru_A0080 0.74 +0.4 92,597 - Rru_A0080 0.74 +0.0 92,900 + +0.7 92,901 - -0.4 92,967 + +0.3 92,967 + -0.4 93,043 + -1.4 93,149 + +0.5 93,150 - +2.1 93,196 - +0.7 93,213 + -0.4 93,213 + -0.4 93,270 + +0.1 93,270 + -1.1 93,273 + Rru_A0081 0.10 +0.1 93,274 - Rru_A0081 0.10 +0.8 93,328 + Rru_A0081 0.15 -0.3 93,328 + Rru_A0081 0.15 +0.1 93,516 + Rru_A0081 0.32 -0.6 93,516 + Rru_A0081 0.32 -0.1 93,516 + Rru_A0081 0.32 -0.2 93,517 - Rru_A0081 0.32 -0.0 93,543 - Rru_A0081 0.35 +0.0 93,573 + Rru_A0081 0.38 -0.0 93,573 + Rru_A0081 0.38 +0.1 93,573 + Rru_A0081 0.38 +0.4 93,573 + Rru_A0081 0.38 -0.3 93,574 - Rru_A0081 0.38 +0.2 93,711 + Rru_A0081 0.50 +0.3 93,711 + Rru_A0081 0.50 +1.3 93,712 - Rru_A0081 0.50 +0.0 93,712 - Rru_A0081 0.50 -0.2 93,712 - Rru_A0081 0.50 +0.1 93,712 - Rru_A0081 0.50 +0.1 93,719 - Rru_A0081 0.51 +0.8 93,719 - Rru_A0081 0.51 +0.0 93,720 + Rru_A0081 0.51 +0.4 93,721 - Rru_A0081 0.51 +0.9 93,721 - Rru_A0081 0.51 +1.0 94,091 + Rru_A0081 0.85 -0.5 94,273 - +0.5 94,414 + -0.2 94,415 - +0.2 94,480 - +0.4 94,576 + +0.4 94,687 + -1.8 94,687 + -0.1 94,687 + -0.1 94,688 - +0.2 94,688 - -0.3 94,688 - -1.3 94,886 + -0.8 94,886 + -0.1 94,886 + -1.3 94,887 - -0.1 94,909 + -1.4 94,909 + -0.3 94,909 + -0.0 94,909 + +0.4 94,910 - +0.1 94,910 - -0.8 95,042 + +1.1 95,055 - +0.2 95,072 + +0.3 95,090 + +0.3 95,090 + +0.1 95,090 + +0.1 95,090 + -0.6 95,090 + -0.5 95,090 + +0.2 95,090 + +0.2 95,090 + +0.1 95,090 + -0.6 95,090 + -0.2 95,091 - -1.0 95,091 - +0.4 95,091 - +0.1 95,091 - +0.4 95,091 - +0.2 95,099 + -1.1 95,100 - +0.3
Or see this region's nucleotide sequence