Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.979.1 and Xcc-8004.980.1 are separated by 1 nucleotides Xcc-8004.980.1 and Xcc-8004.981.1 overlap by 37 nucleotides Xcc-8004.981.1 and Xcc-8004.982.1 are separated by 63 nucleotides Xcc-8004.982.1 and Xcc-8004.983.1 are separated by 66 nucleotides Xcc-8004.983.1 and Xcc-8004.984.1 are separated by 59 nucleotides
Xcc-8004.979.1: Xcc-8004.979.1 - LysR family transcriptional regulator YeiE, at 930,793 to 931,707
Xcc-8004.979.1
Xcc-8004.980.1: Xcc-8004.980.1 - hypothetical protein, at 931,709 to 931,951
Xcc-8004.980.1
Xcc-8004.981.1: Xcc-8004.981.1 - FrmR: Negative transcriptional regulator of formaldehyde detoxification operon, at 931,915 to 932,190
Xcc-8004.981.1
Xcc-8004.982.1: Xcc-8004.982.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 932,254 to 933,363
Xcc-8004.982.1
Xcc-8004.983.1: Xcc-8004.983.1 - Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22), at 933,430 to 934,005
Xcc-8004.983.1
Xcc-8004.984.1: Xcc-8004.984.1 - S-formylglutathione hydrolase (EC 3.1.2.12), at 934,065 to 934,895
Xcc-8004.984.1
Position (kb) 932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 931.699 kb on - strand at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.818 kb on + strand, within Xcc-8004.980.1 at 931.818 kb on + strand, within Xcc-8004.980.1 at 931.819 kb on - strand, within Xcc-8004.980.1 at 931.819 kb on - strand, within Xcc-8004.980.1 at 931.880 kb on + strand, within Xcc-8004.980.1 at 931.880 kb on + strand, within Xcc-8004.980.1 at 931.882 kb on + strand, within Xcc-8004.980.1 at 932.007 kb on - strand, within Xcc-8004.981.1 at 932.081 kb on + strand, within Xcc-8004.981.1 at 932.082 kb on - strand, within Xcc-8004.981.1 at 932.095 kb on - strand, within Xcc-8004.981.1 at 932.180 kb on - strand at 932.180 kb on - strand at 932.180 kb on - strand at 932.415 kb on + strand, within Xcc-8004.982.1 at 932.416 kb on - strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.633 kb on - strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.684 kb on - strand, within Xcc-8004.982.1 at 933.214 kb on - strand, within Xcc-8004.982.1 at 933.435 kb on + strand at 933.436 kb on - strand at 933.458 kb on + strand at 933.626 kb on + strand, within Xcc-8004.983.1 at 933.742 kb on + strand, within Xcc-8004.983.1 at 933.742 kb on + strand, within Xcc-8004.983.1 at 933.742 kb on + strand, within Xcc-8004.983.1 at 933.932 kb on - strand, within Xcc-8004.983.1 at 934.162 kb on - strand, within Xcc-8004.984.1 at 934.162 kb on - strand, within Xcc-8004.984.1 at 934.203 kb on + strand, within Xcc-8004.984.1 at 934.204 kb on - strand, within Xcc-8004.984.1 at 934.267 kb on - strand, within Xcc-8004.984.1 at 934.344 kb on + strand, within Xcc-8004.984.1 at 934.345 kb on - strand, within Xcc-8004.984.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 931,699 - -0.9 931,753 + Xcc-8004.980.1 0.18 -0.6 931,753 + Xcc-8004.980.1 0.18 -0.4 931,753 + Xcc-8004.980.1 0.18 -0.1 931,753 + Xcc-8004.980.1 0.18 +2.4 931,753 + Xcc-8004.980.1 0.18 +1.5 931,753 + Xcc-8004.980.1 0.18 -1.1 931,753 + Xcc-8004.980.1 0.18 -1.2 931,753 + Xcc-8004.980.1 0.18 -2.0 931,754 - Xcc-8004.980.1 0.19 +0.5 931,754 - Xcc-8004.980.1 0.19 -2.2 931,754 - Xcc-8004.980.1 0.19 -0.9 931,754 - Xcc-8004.980.1 0.19 -2.5 931,754 - Xcc-8004.980.1 0.19 -0.4 931,818 + Xcc-8004.980.1 0.45 -0.5 931,818 + Xcc-8004.980.1 0.45 -1.0 931,819 - Xcc-8004.980.1 0.45 +0.5 931,819 - Xcc-8004.980.1 0.45 +0.2 931,880 + Xcc-8004.980.1 0.70 +0.4 931,880 + Xcc-8004.980.1 0.70 +1.2 931,882 + Xcc-8004.980.1 0.71 +0.8 932,007 - Xcc-8004.981.1 0.33 +1.0 932,081 + Xcc-8004.981.1 0.60 -2.8 932,082 - Xcc-8004.981.1 0.61 +1.0 932,095 - Xcc-8004.981.1 0.65 +0.2 932,180 - +1.8 932,180 - -2.3 932,180 - +0.0 932,415 + Xcc-8004.982.1 0.15 -3.3 932,416 - Xcc-8004.982.1 0.15 +0.3 932,515 + Xcc-8004.982.1 0.24 -2.4 932,515 + Xcc-8004.982.1 0.24 +0.5 932,515 + Xcc-8004.982.1 0.24 -0.5 932,515 + Xcc-8004.982.1 0.24 +0.6 932,516 - Xcc-8004.982.1 0.24 -0.1 932,516 - Xcc-8004.982.1 0.24 -2.0 932,516 - Xcc-8004.982.1 0.24 +2.0 932,633 - Xcc-8004.982.1 0.34 +0.5 932,656 + Xcc-8004.982.1 0.36 -1.3 932,656 + Xcc-8004.982.1 0.36 -0.2 932,656 + Xcc-8004.982.1 0.36 +1.3 932,656 + Xcc-8004.982.1 0.36 -0.6 932,656 + Xcc-8004.982.1 0.36 +0.1 932,656 + Xcc-8004.982.1 0.36 -1.5 932,656 + Xcc-8004.982.1 0.36 -1.5 932,656 + Xcc-8004.982.1 0.36 -0.1 932,657 - Xcc-8004.982.1 0.36 -1.1 932,657 - Xcc-8004.982.1 0.36 -1.6 932,683 + Xcc-8004.982.1 0.39 -0.6 932,683 + Xcc-8004.982.1 0.39 -0.9 932,684 - Xcc-8004.982.1 0.39 +0.1 933,214 - Xcc-8004.982.1 0.86 +1.7 933,435 + -0.6 933,436 - +1.8 933,458 + -0.9 933,626 + Xcc-8004.983.1 0.34 -0.4 933,742 + Xcc-8004.983.1 0.54 -2.6 933,742 + Xcc-8004.983.1 0.54 -0.2 933,742 + Xcc-8004.983.1 0.54 +0.7 933,932 - Xcc-8004.983.1 0.87 -0.6 934,162 - Xcc-8004.984.1 0.12 -0.5 934,162 - Xcc-8004.984.1 0.12 +0.2 934,203 + Xcc-8004.984.1 0.17 -2.5 934,204 - Xcc-8004.984.1 0.17 +0.6 934,267 - Xcc-8004.984.1 0.24 -0.5 934,344 + Xcc-8004.984.1 0.34 -0.8 934,345 - Xcc-8004.984.1 0.34 -1.5
Or see this region's nucleotide sequence