Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.877.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.875.1 and Xcc-8004.876.1 overlap by 53 nucleotidesXcc-8004.876.1 and Xcc-8004.877.1 are separated by 387 nucleotidesXcc-8004.877.1 and Xcc-8004.878.1 are separated by 610 nucleotides Xcc-8004.875.1: Xcc-8004.875.1 - Mobile element protein, at 824,967 to 825,437 Xcc-8004.875.1 Xcc-8004.876.1: Xcc-8004.876.1 - Mobile element protein, at 825,385 to 825,771 Xcc-8004.876.1 Xcc-8004.877.1: Xcc-8004.877.1 - hypothetical protein, at 826,159 to 828,201 Xcc-8004.877.1 Xcc-8004.878.1: Xcc-8004.878.1 - Sugar kinase, at 828,812 to 829,744 Xcc-8004.878.1 Position (kb) 826 827 828 829Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 825.421 kb on - strandat 825.633 kb on - strand, within Xcc-8004.876.1at 825.633 kb on - strand, within Xcc-8004.876.1at 826.067 kb on + strandat 826.067 kb on + strandat 826.085 kb on + strandat 826.086 kb on - strandat 826.203 kb on + strandat 826.204 kb on - strandat 826.204 kb on - strandat 826.479 kb on - strand, within Xcc-8004.877.1at 826.479 kb on - strand, within Xcc-8004.877.1at 826.625 kb on + strand, within Xcc-8004.877.1at 826.626 kb on - strand, within Xcc-8004.877.1at 826.626 kb on - strand, within Xcc-8004.877.1at 826.626 kb on - strand, within Xcc-8004.877.1at 826.626 kb on - strand, within Xcc-8004.877.1at 826.870 kb on - strand, within Xcc-8004.877.1at 826.886 kb on + strand, within Xcc-8004.877.1at 826.887 kb on - strand, within Xcc-8004.877.1at 827.198 kb on + strand, within Xcc-8004.877.1at 827.198 kb on + strand, within Xcc-8004.877.1at 827.198 kb on + strand, within Xcc-8004.877.1at 827.198 kb on + strand, within Xcc-8004.877.1at 827.199 kb on - strand, within Xcc-8004.877.1at 827.199 kb on - strand, within Xcc-8004.877.1at 827.199 kb on - strand, within Xcc-8004.877.1at 827.530 kb on - strand, within Xcc-8004.877.1at 827.654 kb on + strand, within Xcc-8004.877.1at 827.654 kb on + strand, within Xcc-8004.877.1at 827.655 kb on - strand, within Xcc-8004.877.1at 827.655 kb on - strand, within Xcc-8004.877.1at 827.655 kb on - strand, within Xcc-8004.877.1at 827.655 kb on - strand, within Xcc-8004.877.1at 827.655 kb on - strand, within Xcc-8004.877.1at 827.655 kb on - strand, within Xcc-8004.877.1at 827.843 kb on + strand, within Xcc-8004.877.1at 827.868 kb on - strand, within Xcc-8004.877.1at 827.868 kb on - strand, within Xcc-8004.877.1at 827.868 kb on - strand, within Xcc-8004.877.1at 827.868 kb on - strand, within Xcc-8004.877.1at 827.987 kb on + strand, within Xcc-8004.877.1at 827.987 kb on + strand, within Xcc-8004.877.1at 827.987 kb on + strand, within Xcc-8004.877.1at 827.987 kb on + strand, within Xcc-8004.877.1at 827.987 kb on + strand, within Xcc-8004.877.1at 827.987 kb on + strand, within Xcc-8004.877.1at 827.988 kb on - strand, within Xcc-8004.877.1at 828.042 kb on + strandat 828.168 kb on - strandat 828.243 kb on + strandat 828.305 kb on + strandat 828.326 kb on + strandat 828.354 kb on - strandat 828.397 kb on + strandat 828.397 kb on + strandat 828.398 kb on - strandat 828.398 kb on - strandat 828.398 kb on - strandat 828.398 kb on - strandat 828.398 kb on - strandat 828.417 kb on + strandat 828.417 kb on + strandat 828.506 kb on - strandat 828.671 kb on - strandat 828.671 kb on - strandat 828.671 kb on - strandat 828.698 kb on + strandat 828.698 kb on + strandat 828.699 kb on - strandat 828.699 kb on - strandat 828.699 kb on - strandat 828.723 kb on + strandat 828.723 kb on + strandat 828.724 kb on - strandat 828.724 kb on - strandat 828.724 kb on - strandat 828.775 kb on + strandat 828.775 kb on + strandat 828.775 kb on + strandat 828.775 kb on + strandat 828.775 kb on + strandat 828.775 kb on + strandat 828.775 kb on + strandat 828.776 kb on - strandat 828.776 kb on - strandat 828.776 kb on - strandat 828.776 kb on - strandat 828.776 kb on - strandat 828.776 kb on - strandat 828.776 kb on - strandat 828.813 kb on + strandat 828.814 kb on - strandat 828.814 kb on - strandat 828.814 kb on - strandat 828.948 kb on + strand, within Xcc-8004.878.1at 828.948 kb on + strand, within Xcc-8004.878.1at 828.948 kb on + strand, within Xcc-8004.878.1at 828.949 kb on - strand, within Xcc-8004.878.1at 828.949 kb on - strand, within Xcc-8004.878.1at 828.949 kb on - strand, within Xcc-8004.878.1at 828.949 kb on - strand, within Xcc-8004.878.1at 828.949 kb on - strand, within Xcc-8004.878.1at 828.949 kb on - strand, within Xcc-8004.878.1at 828.967 kb on - strand, within Xcc-8004.878.1at 828.967 kb on - strand, within Xcc-8004.878.1at 829.044 kb on + strand, within Xcc-8004.878.1at 829.044 kb on + strand, within Xcc-8004.878.1at 829.045 kb on - strand, within Xcc-8004.878.1at 829.045 kb on - strand, within Xcc-8004.878.1at 829.099 kb on - strand, within Xcc-8004.878.1at 829.099 kb on - strand, within Xcc-8004.878.1at 829.099 kb on - strand, within Xcc-8004.878.1at 829.185 kb on + strand, within Xcc-8004.878.1at 829.186 kb on - strand, within Xcc-8004.878.1at 829.186 kb on - strand, within Xcc-8004.878.1at 829.186 kb on - strand, within Xcc-8004.878.1at 829.186 kb on - strand, within Xcc-8004.878.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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825,421 - +0.3
825,633 - Xcc-8004.876.1 0.64 +1.8
825,633 - Xcc-8004.876.1 0.64 -0.5
826,067 + -1.3
826,067 + -0.9
826,085 + -2.4
826,086 - -1.3
826,203 + +0.4
826,204 - -2.3
826,204 - -1.7
826,479 - Xcc-8004.877.1 0.16 -1.9
826,479 - Xcc-8004.877.1 0.16 +0.2
826,625 + Xcc-8004.877.1 0.23 +1.2
826,626 - Xcc-8004.877.1 0.23 +0.4
826,626 - Xcc-8004.877.1 0.23 -0.3
826,626 - Xcc-8004.877.1 0.23 +0.2
826,626 - Xcc-8004.877.1 0.23 +1.7
826,870 - Xcc-8004.877.1 0.35 +2.1
826,886 + Xcc-8004.877.1 0.36 +0.2
826,887 - Xcc-8004.877.1 0.36 +0.2
827,198 + Xcc-8004.877.1 0.51 +0.9
827,198 + Xcc-8004.877.1 0.51 +0.4
827,198 + Xcc-8004.877.1 0.51 -2.8
827,198 + Xcc-8004.877.1 0.51 +0.6
827,199 - Xcc-8004.877.1 0.51 +1.2
827,199 - Xcc-8004.877.1 0.51 +0.3
827,199 - Xcc-8004.877.1 0.51 +0.9
827,530 - Xcc-8004.877.1 0.67 -0.9
827,654 + Xcc-8004.877.1 0.73 +0.3
827,654 + Xcc-8004.877.1 0.73 +1.2
827,655 - Xcc-8004.877.1 0.73 -2.6
827,655 - Xcc-8004.877.1 0.73 -1.3
827,655 - Xcc-8004.877.1 0.73 +0.8
827,655 - Xcc-8004.877.1 0.73 +1.6
827,655 - Xcc-8004.877.1 0.73 +1.8
827,655 - Xcc-8004.877.1 0.73 -0.5
827,843 + Xcc-8004.877.1 0.82 +0.7
827,868 - Xcc-8004.877.1 0.84 +0.1
827,868 - Xcc-8004.877.1 0.84 +1.3
827,868 - Xcc-8004.877.1 0.84 -1.7
827,868 - Xcc-8004.877.1 0.84 -2.2
827,987 + Xcc-8004.877.1 0.89 +1.7
827,987 + Xcc-8004.877.1 0.89 +0.8
827,987 + Xcc-8004.877.1 0.89 +0.4
827,987 + Xcc-8004.877.1 0.89 +1.5
827,987 + Xcc-8004.877.1 0.89 -1.3
827,987 + Xcc-8004.877.1 0.89 -0.5
827,988 - Xcc-8004.877.1 0.90 +0.8
828,042 + -1.5
828,168 - +0.8
828,243 + -0.4
828,305 + -2.0
828,326 + +2.7
828,354 - +0.7
828,397 + -0.8
828,397 + +2.5
828,398 - +0.5
828,398 - -1.2
828,398 - +0.4
828,398 - +0.2
828,398 - +1.1
828,417 + +0.1
828,417 + +0.5
828,506 - +2.0
828,671 - +0.4
828,671 - -0.5
828,671 - +0.7
828,698 + -2.0
828,698 + -0.9
828,699 - +0.9
828,699 - -0.5
828,699 - +0.4
828,723 + +0.0
828,723 + +1.5
828,724 - +0.1
828,724 - -0.2
828,724 - +2.1
828,775 + -0.5
828,775 + -1.8
828,775 + -0.3
828,775 + +4.5
828,775 + -1.8
828,775 + -0.2
828,775 + -0.4
828,776 - -0.2
828,776 - +0.4
828,776 - -0.7
828,776 - -0.1
828,776 - -1.6
828,776 - -0.3
828,776 - +0.3
828,813 + +1.9
828,814 - -0.6
828,814 - -2.0
828,814 - +2.0
828,948 + Xcc-8004.878.1 0.15 +1.7
828,948 + Xcc-8004.878.1 0.15 +0.7
828,948 + Xcc-8004.878.1 0.15 +1.3
828,949 - Xcc-8004.878.1 0.15 -0.8
828,949 - Xcc-8004.878.1 0.15 -0.7
828,949 - Xcc-8004.878.1 0.15 +0.8
828,949 - Xcc-8004.878.1 0.15 +0.6
828,949 - Xcc-8004.878.1 0.15 -1.5
828,949 - Xcc-8004.878.1 0.15 +0.1
828,967 - Xcc-8004.878.1 0.17 -1.9
828,967 - Xcc-8004.878.1 0.17 -0.3
829,044 + Xcc-8004.878.1 0.25 -1.0
829,044 + Xcc-8004.878.1 0.25 -1.9
829,045 - Xcc-8004.878.1 0.25 -0.3
829,045 - Xcc-8004.878.1 0.25 -0.0
829,099 - Xcc-8004.878.1 0.31 -0.9
829,099 - Xcc-8004.878.1 0.31 +1.2
829,099 - Xcc-8004.878.1 0.31 -1.0
829,185 + Xcc-8004.878.1 0.40 +0.3
829,186 - Xcc-8004.878.1 0.40 -0.6
829,186 - Xcc-8004.878.1 0.40 +1.2
829,186 - Xcc-8004.878.1 0.40 -2.5
829,186 - Xcc-8004.878.1 0.40 -1.8

Or see this region's nucleotide sequence