Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4808.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4806.1 and Xcc-8004.4807.1 are separated by 237 nucleotidesXcc-8004.4807.1 and Xcc-8004.4808.1 are separated by 10 nucleotidesXcc-8004.4808.1 and Xcc-8004.4809.1 are separated by 315 nucleotides Xcc-8004.4806.1: Xcc-8004.4806.1 - FIG01211609: hypothetical protein, at 4,575,821 to 4,576,198 Xcc-8004.4806.1 Xcc-8004.4807.1: Xcc-8004.4807.1 - FIG01210497: hypothetical protein, at 4,576,436 to 4,576,633 Xcc-8004.4807.1 Xcc-8004.4808.1: Xcc-8004.4808.1 - D-alanyl-D-alanine dipeptidase (EC 3.4.13.22), at 4,576,644 to 4,577,348 Xcc-8004.4808.1 Xcc-8004.4809.1: Xcc-8004.4809.1 - FIG01210473: hypothetical protein, at 4,577,664 to 4,579,025 Xcc-8004.4809.1 Position (kb) 4576 4577 4578Strain fitness (log2 ratio) -2 -1 0 1 2at 4575.651 kb on + strandat 4575.651 kb on + strandat 4575.651 kb on + strandat 4575.651 kb on + strandat 4575.652 kb on - strandat 4575.652 kb on - strandat 4575.652 kb on - strandat 4575.652 kb on - strandat 4575.652 kb on - strandat 4575.652 kb on - strandat 4575.652 kb on - strandat 4575.652 kb on - strandat 4575.652 kb on - strandat 4575.652 kb on - strandat 4575.705 kb on + strandat 4575.706 kb on - strandat 4575.706 kb on - strandat 4575.741 kb on + strandat 4575.741 kb on + strandat 4575.742 kb on - strandat 4575.742 kb on - strandat 4575.823 kb on - strandat 4575.823 kb on - strandat 4575.969 kb on + strand, within Xcc-8004.4806.1at 4575.970 kb on - strand, within Xcc-8004.4806.1at 4575.970 kb on - strand, within Xcc-8004.4806.1at 4576.128 kb on - strand, within Xcc-8004.4806.1at 4576.234 kb on - strandat 4576.539 kb on + strand, within Xcc-8004.4807.1at 4576.539 kb on + strand, within Xcc-8004.4807.1at 4576.539 kb on + strand, within Xcc-8004.4807.1at 4576.539 kb on + strand, within Xcc-8004.4807.1at 4576.539 kb on + strand, within Xcc-8004.4807.1at 4576.539 kb on + strand, within Xcc-8004.4807.1at 4576.539 kb on + strand, within Xcc-8004.4807.1at 4576.540 kb on - strand, within Xcc-8004.4807.1at 4576.540 kb on - strand, within Xcc-8004.4807.1at 4576.540 kb on - strand, within Xcc-8004.4807.1at 4576.540 kb on - strand, within Xcc-8004.4807.1at 4576.540 kb on - strand, within Xcc-8004.4807.1at 4576.594 kb on - strand, within Xcc-8004.4807.1at 4576.606 kb on + strand, within Xcc-8004.4807.1at 4576.720 kb on + strand, within Xcc-8004.4808.1at 4576.804 kb on + strand, within Xcc-8004.4808.1at 4576.805 kb on + strand, within Xcc-8004.4808.1at 4576.805 kb on + strand, within Xcc-8004.4808.1at 4576.806 kb on - strand, within Xcc-8004.4808.1at 4576.806 kb on - strand, within Xcc-8004.4808.1at 4576.933 kb on + strand, within Xcc-8004.4808.1at 4576.933 kb on + strand, within Xcc-8004.4808.1at 4576.933 kb on + strand, within Xcc-8004.4808.1at 4576.933 kb on + strand, within Xcc-8004.4808.1at 4576.934 kb on - strand, within Xcc-8004.4808.1at 4576.970 kb on - strand, within Xcc-8004.4808.1at 4576.972 kb on + strand, within Xcc-8004.4808.1at 4576.973 kb on - strand, within Xcc-8004.4808.1at 4577.048 kb on - strand, within Xcc-8004.4808.1at 4577.134 kb on + strand, within Xcc-8004.4808.1at 4577.135 kb on - strand, within Xcc-8004.4808.1at 4577.152 kb on + strand, within Xcc-8004.4808.1at 4577.153 kb on - strand, within Xcc-8004.4808.1at 4577.293 kb on - strandat 4577.310 kb on + strandat 4577.311 kb on - strandat 4577.311 kb on - strandat 4577.311 kb on - strandat 4577.319 kb on + strandat 4577.319 kb on + strandat 4577.320 kb on - strandat 4577.376 kb on - strandat 4577.395 kb on + strandat 4577.413 kb on + strandat 4577.413 kb on + strandat 4577.413 kb on + strandat 4577.414 kb on - strandat 4577.530 kb on + strandat 4577.531 kb on - strandat 4577.531 kb on - strandat 4577.561 kb on + strandat 4577.561 kb on + strandat 4577.561 kb on + strandat 4577.561 kb on + strandat 4577.561 kb on + strandat 4577.561 kb on + strandat 4577.561 kb on + strandat 4577.562 kb on - strandat 4577.562 kb on - strandat 4577.562 kb on - strandat 4577.565 kb on + strandat 4577.565 kb on + strandat 4577.565 kb on + strandat 4577.565 kb on + strandat 4577.566 kb on - strandat 4577.566 kb on - strandat 4577.566 kb on - strandat 4577.655 kb on + strandat 4577.655 kb on + strandat 4577.655 kb on + strandat 4577.656 kb on - strandat 4577.800 kb on + strandat 4577.800 kb on + strandat 4577.897 kb on + strand, within Xcc-8004.4809.1at 4577.897 kb on + strand, within Xcc-8004.4809.1at 4577.897 kb on + strand, within Xcc-8004.4809.1at 4577.898 kb on - strand, within Xcc-8004.4809.1at 4577.898 kb on - strand, within Xcc-8004.4809.1at 4578.071 kb on + strand, within Xcc-8004.4809.1at 4578.072 kb on - strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.166 kb on + strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.167 kb on - strand, within Xcc-8004.4809.1at 4578.196 kb on + strand, within Xcc-8004.4809.1at 4578.275 kb on + strand, within Xcc-8004.4809.1at 4578.275 kb on + strand, within Xcc-8004.4809.1at 4578.276 kb on - strand, within Xcc-8004.4809.1at 4578.276 kb on - strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.279 kb on + strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.280 kb on - strand, within Xcc-8004.4809.1at 4578.284 kb on + strand, within Xcc-8004.4809.1at 4578.284 kb on + strand, within Xcc-8004.4809.1at 4578.284 kb on + strand, within Xcc-8004.4809.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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4,575,651 + +1.2
4,575,651 + -0.6
4,575,651 + -0.7
4,575,651 + -2.0
4,575,652 - -1.3
4,575,652 - +0.8
4,575,652 - -2.0
4,575,652 - +1.2
4,575,652 - -0.7
4,575,652 - -2.0
4,575,652 - -0.6
4,575,652 - +0.5
4,575,652 - -1.7
4,575,652 - -2.1
4,575,705 + +1.0
4,575,706 - -1.3
4,575,706 - +0.3
4,575,741 + -2.0
4,575,741 + -0.1
4,575,742 - -1.1
4,575,742 - +0.0
4,575,823 - +0.1
4,575,823 - +0.5
4,575,969 + Xcc-8004.4806.1 0.39 +1.0
4,575,970 - Xcc-8004.4806.1 0.39 +0.1
4,575,970 - Xcc-8004.4806.1 0.39 +1.2
4,576,128 - Xcc-8004.4806.1 0.81 -0.1
4,576,234 - +0.7
4,576,539 + Xcc-8004.4807.1 0.52 -0.1
4,576,539 + Xcc-8004.4807.1 0.52 -1.7
4,576,539 + Xcc-8004.4807.1 0.52 +2.4
4,576,539 + Xcc-8004.4807.1 0.52 -1.2
4,576,539 + Xcc-8004.4807.1 0.52 -0.0
4,576,539 + Xcc-8004.4807.1 0.52 +0.7
4,576,539 + Xcc-8004.4807.1 0.52 -0.8
4,576,540 - Xcc-8004.4807.1 0.53 +2.2
4,576,540 - Xcc-8004.4807.1 0.53 +0.3
4,576,540 - Xcc-8004.4807.1 0.53 -0.8
4,576,540 - Xcc-8004.4807.1 0.53 -0.0
4,576,540 - Xcc-8004.4807.1 0.53 +0.9
4,576,594 - Xcc-8004.4807.1 0.80 -2.6
4,576,606 + Xcc-8004.4807.1 0.86 +0.0
4,576,720 + Xcc-8004.4808.1 0.11 -0.8
4,576,804 + Xcc-8004.4808.1 0.23 -0.7
4,576,805 + Xcc-8004.4808.1 0.23 +0.2
4,576,805 + Xcc-8004.4808.1 0.23 -0.7
4,576,806 - Xcc-8004.4808.1 0.23 +1.1
4,576,806 - Xcc-8004.4808.1 0.23 -0.0
4,576,933 + Xcc-8004.4808.1 0.41 -2.3
4,576,933 + Xcc-8004.4808.1 0.41 -1.6
4,576,933 + Xcc-8004.4808.1 0.41 -1.1
4,576,933 + Xcc-8004.4808.1 0.41 -0.6
4,576,934 - Xcc-8004.4808.1 0.41 +0.3
4,576,970 - Xcc-8004.4808.1 0.46 -0.3
4,576,972 + Xcc-8004.4808.1 0.47 -2.0
4,576,973 - Xcc-8004.4808.1 0.47 -0.2
4,577,048 - Xcc-8004.4808.1 0.57 +0.2
4,577,134 + Xcc-8004.4808.1 0.70 +1.9
4,577,135 - Xcc-8004.4808.1 0.70 +1.1
4,577,152 + Xcc-8004.4808.1 0.72 -0.1
4,577,153 - Xcc-8004.4808.1 0.72 -1.5
4,577,293 - -0.6
4,577,310 + -1.9
4,577,311 - +0.4
4,577,311 - -0.4
4,577,311 - -0.0
4,577,319 + -2.5
4,577,319 + +0.4
4,577,320 - +0.7
4,577,376 - +0.0
4,577,395 + -0.1
4,577,413 + +1.1
4,577,413 + +1.2
4,577,413 + +2.4
4,577,414 - +0.2
4,577,530 + +0.7
4,577,531 - -0.9
4,577,531 - -1.7
4,577,561 + +0.3
4,577,561 + -0.7
4,577,561 + -0.6
4,577,561 + +0.6
4,577,561 + -1.2
4,577,561 + -0.6
4,577,561 + -0.6
4,577,562 - +1.7
4,577,562 - +0.2
4,577,562 - +0.1
4,577,565 + -0.2
4,577,565 + -2.4
4,577,565 + +0.1
4,577,565 + +2.1
4,577,566 - -1.6
4,577,566 - -0.5
4,577,566 - -0.4
4,577,655 + +0.1
4,577,655 + -0.1
4,577,655 + -0.2
4,577,656 - +0.7
4,577,800 + -0.9
4,577,800 + -0.3
4,577,897 + Xcc-8004.4809.1 0.17 +0.8
4,577,897 + Xcc-8004.4809.1 0.17 +0.4
4,577,897 + Xcc-8004.4809.1 0.17 -0.4
4,577,898 - Xcc-8004.4809.1 0.17 +0.8
4,577,898 - Xcc-8004.4809.1 0.17 +0.2
4,578,071 + Xcc-8004.4809.1 0.30 +1.5
4,578,072 - Xcc-8004.4809.1 0.30 -0.1
4,578,166 + Xcc-8004.4809.1 0.37 -1.7
4,578,166 + Xcc-8004.4809.1 0.37 -1.3
4,578,166 + Xcc-8004.4809.1 0.37 +0.1
4,578,166 + Xcc-8004.4809.1 0.37 +2.2
4,578,166 + Xcc-8004.4809.1 0.37 -1.6
4,578,166 + Xcc-8004.4809.1 0.37 +0.1
4,578,166 + Xcc-8004.4809.1 0.37 -2.3
4,578,167 - Xcc-8004.4809.1 0.37 -0.4
4,578,167 - Xcc-8004.4809.1 0.37 +2.3
4,578,167 - Xcc-8004.4809.1 0.37 +0.3
4,578,167 - Xcc-8004.4809.1 0.37 -1.1
4,578,167 - Xcc-8004.4809.1 0.37 -0.5
4,578,167 - Xcc-8004.4809.1 0.37 -0.3
4,578,167 - Xcc-8004.4809.1 0.37 -0.1
4,578,196 + Xcc-8004.4809.1 0.39 -2.4
4,578,275 + Xcc-8004.4809.1 0.45 +1.2
4,578,275 + Xcc-8004.4809.1 0.45 +1.4
4,578,276 - Xcc-8004.4809.1 0.45 -0.2
4,578,276 - Xcc-8004.4809.1 0.45 +0.5
4,578,279 + Xcc-8004.4809.1 0.45 +0.6
4,578,279 + Xcc-8004.4809.1 0.45 -0.3
4,578,279 + Xcc-8004.4809.1 0.45 +1.3
4,578,279 + Xcc-8004.4809.1 0.45 -1.0
4,578,279 + Xcc-8004.4809.1 0.45 +0.6
4,578,279 + Xcc-8004.4809.1 0.45 -1.1
4,578,279 + Xcc-8004.4809.1 0.45 -0.5
4,578,279 + Xcc-8004.4809.1 0.45 -0.4
4,578,279 + Xcc-8004.4809.1 0.45 +0.5
4,578,280 - Xcc-8004.4809.1 0.45 +1.6
4,578,280 - Xcc-8004.4809.1 0.45 +0.9
4,578,280 - Xcc-8004.4809.1 0.45 -0.9
4,578,280 - Xcc-8004.4809.1 0.45 +0.0
4,578,280 - Xcc-8004.4809.1 0.45 +0.9
4,578,280 - Xcc-8004.4809.1 0.45 +1.1
4,578,280 - Xcc-8004.4809.1 0.45 -1.3
4,578,280 - Xcc-8004.4809.1 0.45 +0.4
4,578,284 + Xcc-8004.4809.1 0.46 +0.3
4,578,284 + Xcc-8004.4809.1 0.46 -0.4
4,578,284 + Xcc-8004.4809.1 0.46 -0.7

Or see this region's nucleotide sequence