Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.378.1 and Xcc-8004.379.1 are separated by 159 nucleotides Xcc-8004.379.1 and Xcc-8004.380.1 are separated by 160 nucleotides Xcc-8004.380.1 and Xcc-8004.381.1 overlap by 4 nucleotides
Xcc-8004.378.1: Xcc-8004.378.1 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 362,493 to 363,806
Xcc-8004.378.1
Xcc-8004.379.1: Xcc-8004.379.1 - hypothetical protein, at 363,966 to 364,097
Xcc-8004.379.1
Xcc-8004.380.1: Xcc-8004.380.1 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 364,258 to 365,238
Xcc-8004.380.1
Xcc-8004.381.1: Xcc-8004.381.1 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 365,235 to 366,287
Xcc-8004.381.1
Position (kb) 364
365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 363.414 kb on + strand, within Xcc-8004.378.1 at 363.523 kb on + strand, within Xcc-8004.378.1 at 363.524 kb on - strand, within Xcc-8004.378.1 at 363.715 kb on + strand at 363.715 kb on + strand at 363.715 kb on + strand at 363.716 kb on - strand at 363.716 kb on - strand at 363.716 kb on - strand at 363.891 kb on + strand at 363.906 kb on + strand at 363.906 kb on + strand at 363.906 kb on + strand at 363.906 kb on + strand at 363.907 kb on - strand at 364.652 kb on + strand, within Xcc-8004.380.1 at 364.652 kb on + strand, within Xcc-8004.380.1 at 364.652 kb on + strand, within Xcc-8004.380.1 at 364.652 kb on + strand, within Xcc-8004.380.1 at 364.653 kb on - strand, within Xcc-8004.380.1 at 364.653 kb on - strand, within Xcc-8004.380.1 at 364.653 kb on - strand, within Xcc-8004.380.1 at 364.653 kb on - strand, within Xcc-8004.380.1 at 364.805 kb on + strand, within Xcc-8004.380.1 at 364.805 kb on + strand, within Xcc-8004.380.1 at 364.805 kb on + strand, within Xcc-8004.380.1 at 364.805 kb on + strand, within Xcc-8004.380.1 at 364.805 kb on + strand, within Xcc-8004.380.1 at 364.806 kb on - strand, within Xcc-8004.380.1 at 364.806 kb on - strand, within Xcc-8004.380.1 at 364.808 kb on + strand, within Xcc-8004.380.1 at 364.808 kb on + strand, within Xcc-8004.380.1 at 364.808 kb on + strand, within Xcc-8004.380.1 at 364.809 kb on - strand, within Xcc-8004.380.1 at 364.809 kb on - strand, within Xcc-8004.380.1 at 364.809 kb on - strand, within Xcc-8004.380.1 at 364.809 kb on - strand, within Xcc-8004.380.1 at 364.809 kb on - strand, within Xcc-8004.380.1 at 365.030 kb on + strand, within Xcc-8004.380.1 at 365.030 kb on + strand, within Xcc-8004.380.1 at 365.030 kb on + strand, within Xcc-8004.380.1 at 365.030 kb on + strand, within Xcc-8004.380.1 at 365.030 kb on + strand, within Xcc-8004.380.1 at 365.031 kb on - strand, within Xcc-8004.380.1 at 365.255 kb on + strand at 365.257 kb on + strand at 365.258 kb on - strand at 365.258 kb on - strand at 365.258 kb on - strand at 365.344 kb on + strand, within Xcc-8004.381.1 at 365.344 kb on + strand, within Xcc-8004.381.1 at 365.345 kb on - strand, within Xcc-8004.381.1 at 365.629 kb on + strand, within Xcc-8004.381.1 at 365.629 kb on + strand, within Xcc-8004.381.1 at 365.629 kb on + strand, within Xcc-8004.381.1 at 365.629 kb on + strand, within Xcc-8004.381.1 at 365.630 kb on - strand, within Xcc-8004.381.1 at 365.650 kb on + strand, within Xcc-8004.381.1 at 365.650 kb on + strand, within Xcc-8004.381.1 at 365.651 kb on - strand, within Xcc-8004.381.1 at 365.689 kb on + strand, within Xcc-8004.381.1 at 365.689 kb on + strand, within Xcc-8004.381.1 at 365.689 kb on + strand, within Xcc-8004.381.1 at 365.689 kb on + strand, within Xcc-8004.381.1 at 365.689 kb on + strand, within Xcc-8004.381.1 at 365.689 kb on + strand, within Xcc-8004.381.1 at 365.690 kb on - strand, within Xcc-8004.381.1 at 365.938 kb on + strand, within Xcc-8004.381.1 at 365.938 kb on + strand, within Xcc-8004.381.1 at 365.938 kb on + strand, within Xcc-8004.381.1 at 365.938 kb on + strand, within Xcc-8004.381.1 at 365.938 kb on + strand, within Xcc-8004.381.1 at 365.938 kb on + strand, within Xcc-8004.381.1 at 365.939 kb on - strand, within Xcc-8004.381.1 at 365.939 kb on - strand, within Xcc-8004.381.1 at 365.939 kb on - strand, within Xcc-8004.381.1 at 365.939 kb on - strand, within Xcc-8004.381.1 at 365.939 kb on - strand, within Xcc-8004.381.1 at 366.031 kb on + strand, within Xcc-8004.381.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 363,414 + Xcc-8004.378.1 0.70 +0.8 363,523 + Xcc-8004.378.1 0.78 +1.3 363,524 - Xcc-8004.378.1 0.78 +0.5 363,715 + -0.9 363,715 + +0.5 363,715 + +0.0 363,716 - -1.6 363,716 - -0.3 363,716 - -1.2 363,891 + +0.9 363,906 + +0.1 363,906 + +0.4 363,906 + -1.4 363,906 + -1.7 363,907 - +1.5 364,652 + Xcc-8004.380.1 0.40 -0.6 364,652 + Xcc-8004.380.1 0.40 -2.8 364,652 + Xcc-8004.380.1 0.40 +1.9 364,652 + Xcc-8004.380.1 0.40 +0.5 364,653 - Xcc-8004.380.1 0.40 -1.0 364,653 - Xcc-8004.380.1 0.40 +0.4 364,653 - Xcc-8004.380.1 0.40 +1.1 364,653 - Xcc-8004.380.1 0.40 -0.8 364,805 + Xcc-8004.380.1 0.56 +0.1 364,805 + Xcc-8004.380.1 0.56 -0.5 364,805 + Xcc-8004.380.1 0.56 -0.2 364,805 + Xcc-8004.380.1 0.56 -2.2 364,805 + Xcc-8004.380.1 0.56 -0.6 364,806 - Xcc-8004.380.1 0.56 -0.1 364,806 - Xcc-8004.380.1 0.56 +1.1 364,808 + Xcc-8004.380.1 0.56 -0.9 364,808 + Xcc-8004.380.1 0.56 +0.4 364,808 + Xcc-8004.380.1 0.56 -0.5 364,809 - Xcc-8004.380.1 0.56 -2.3 364,809 - Xcc-8004.380.1 0.56 -0.7 364,809 - Xcc-8004.380.1 0.56 +0.9 364,809 - Xcc-8004.380.1 0.56 +0.2 364,809 - Xcc-8004.380.1 0.56 +0.2 365,030 + Xcc-8004.380.1 0.79 -1.4 365,030 + Xcc-8004.380.1 0.79 -0.2 365,030 + Xcc-8004.380.1 0.79 +0.3 365,030 + Xcc-8004.380.1 0.79 +1.1 365,030 + Xcc-8004.380.1 0.79 -0.6 365,031 - Xcc-8004.380.1 0.79 -0.3 365,255 + +0.3 365,257 + +1.7 365,258 - +0.1 365,258 - -1.7 365,258 - -0.5 365,344 + Xcc-8004.381.1 0.10 +0.1 365,344 + Xcc-8004.381.1 0.10 -0.5 365,345 - Xcc-8004.381.1 0.10 +1.3 365,629 + Xcc-8004.381.1 0.37 +1.2 365,629 + Xcc-8004.381.1 0.37 +0.3 365,629 + Xcc-8004.381.1 0.37 -0.8 365,629 + Xcc-8004.381.1 0.37 +1.2 365,630 - Xcc-8004.381.1 0.38 -0.1 365,650 + Xcc-8004.381.1 0.39 +0.3 365,650 + Xcc-8004.381.1 0.39 -0.1 365,651 - Xcc-8004.381.1 0.40 +1.0 365,689 + Xcc-8004.381.1 0.43 -1.6 365,689 + Xcc-8004.381.1 0.43 -0.3 365,689 + Xcc-8004.381.1 0.43 -2.2 365,689 + Xcc-8004.381.1 0.43 +0.5 365,689 + Xcc-8004.381.1 0.43 -0.3 365,689 + Xcc-8004.381.1 0.43 +0.3 365,690 - Xcc-8004.381.1 0.43 +2.7 365,938 + Xcc-8004.381.1 0.67 +0.7 365,938 + Xcc-8004.381.1 0.67 +1.8 365,938 + Xcc-8004.381.1 0.67 -0.3 365,938 + Xcc-8004.381.1 0.67 -2.0 365,938 + Xcc-8004.381.1 0.67 +0.8 365,938 + Xcc-8004.381.1 0.67 +1.7 365,939 - Xcc-8004.381.1 0.67 +0.6 365,939 - Xcc-8004.381.1 0.67 +2.7 365,939 - Xcc-8004.381.1 0.67 -1.0 365,939 - Xcc-8004.381.1 0.67 +1.6 365,939 - Xcc-8004.381.1 0.67 -0.2 366,031 + Xcc-8004.381.1 0.76 +1.0
Or see this region's nucleotide sequence