Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.354.1 and Xcc-8004.355.1 are separated by 161 nucleotides Xcc-8004.355.1 and Xcc-8004.356.1 are separated by 136 nucleotides Xcc-8004.356.1 and Xcc-8004.357.1 are separated by 57 nucleotides Xcc-8004.357.1 and Xcc-8004.358.1 are separated by 116 nucleotides
Xcc-8004.354.1: Xcc-8004.354.1 - macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif., at 338,123 to 340,624
Xcc-8004.354.1
Xcc-8004.355.1: Xcc-8004.355.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 340,786 to 342,903
Xcc-8004.355.1
Xcc-8004.356.1: Xcc-8004.356.1 - hypothetical protein, at 343,040 to 343,153
Xcc-8004.356.1
Xcc-8004.357.1: Xcc-8004.357.1 - FIG01210225: hypothetical protein, at 343,211 to 343,684
Xcc-8004.357.1
Xcc-8004.358.1: Xcc-8004.358.1 - 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17), at 343,801 to 344,133
Xcc-8004.358.1
Position (kb) 340
341
342
343 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 339.815 kb on + strand, within Xcc-8004.354.1 at 340.077 kb on + strand, within Xcc-8004.354.1 at 340.759 kb on + strand at 340.759 kb on + strand at 340.759 kb on + strand at 340.759 kb on + strand at 340.759 kb on + strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.760 kb on - strand at 340.785 kb on + strand at 340.785 kb on + strand at 340.785 kb on + strand at 340.785 kb on + strand at 340.786 kb on - strand at 341.173 kb on + strand, within Xcc-8004.355.1 at 341.173 kb on + strand, within Xcc-8004.355.1 at 341.173 kb on + strand, within Xcc-8004.355.1 at 341.174 kb on - strand, within Xcc-8004.355.1 at 341.174 kb on - strand, within Xcc-8004.355.1 at 341.209 kb on + strand, within Xcc-8004.355.1 at 341.353 kb on + strand, within Xcc-8004.355.1 at 341.353 kb on + strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.354 kb on - strand, within Xcc-8004.355.1 at 341.657 kb on - strand, within Xcc-8004.355.1 at 341.657 kb on - strand, within Xcc-8004.355.1 at 341.914 kb on + strand, within Xcc-8004.355.1 at 341.914 kb on + strand, within Xcc-8004.355.1 at 341.914 kb on + strand, within Xcc-8004.355.1 at 341.915 kb on - strand, within Xcc-8004.355.1 at 341.915 kb on - strand, within Xcc-8004.355.1 at 342.252 kb on + strand, within Xcc-8004.355.1 at 342.252 kb on + strand, within Xcc-8004.355.1 at 342.252 kb on + strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.253 kb on - strand, within Xcc-8004.355.1 at 342.444 kb on + strand, within Xcc-8004.355.1 at 342.468 kb on - strand, within Xcc-8004.355.1 at 343.140 kb on + strand, within Xcc-8004.356.1 at 343.140 kb on + strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.141 kb on - strand, within Xcc-8004.356.1 at 343.259 kb on + strand, within Xcc-8004.357.1 at 343.260 kb on - strand, within Xcc-8004.357.1 at 343.617 kb on + strand, within Xcc-8004.357.1 at 343.650 kb on + strand at 343.650 kb on + strand at 343.651 kb on - strand at 343.651 kb on - strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.667 kb on + strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.668 kb on - strand at 343.728 kb on + strand at 343.729 kb on - strand at 343.814 kb on + strand at 343.823 kb on + strand at 343.823 kb on + strand at 343.824 kb on - strand at 343.824 kb on - strand at 343.856 kb on + strand, within Xcc-8004.358.1 at 343.873 kb on + strand, within Xcc-8004.358.1 at 343.874 kb on - strand, within Xcc-8004.358.1 at 343.874 kb on - strand, within Xcc-8004.358.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 339,815 + Xcc-8004.354.1 0.68 +0.2 340,077 + Xcc-8004.354.1 0.78 -0.6 340,759 + -1.6 340,759 + -1.3 340,759 + -0.2 340,759 + +0.3 340,759 + +0.2 340,760 - +2.0 340,760 - +0.4 340,760 - -0.8 340,760 - -0.0 340,760 - +1.6 340,760 - -0.5 340,760 - +1.3 340,760 - +1.4 340,760 - -0.8 340,785 + +0.6 340,785 + -0.7 340,785 + +1.1 340,785 + +0.2 340,786 - -0.9 341,173 + Xcc-8004.355.1 0.18 +1.4 341,173 + Xcc-8004.355.1 0.18 -0.6 341,173 + Xcc-8004.355.1 0.18 +0.0 341,174 - Xcc-8004.355.1 0.18 +0.7 341,174 - Xcc-8004.355.1 0.18 -0.2 341,209 + Xcc-8004.355.1 0.20 +0.3 341,353 + Xcc-8004.355.1 0.27 +5.2 341,353 + Xcc-8004.355.1 0.27 -1.0 341,354 - Xcc-8004.355.1 0.27 +0.3 341,354 - Xcc-8004.355.1 0.27 +0.4 341,354 - Xcc-8004.355.1 0.27 +1.0 341,354 - Xcc-8004.355.1 0.27 +0.2 341,354 - Xcc-8004.355.1 0.27 +0.0 341,657 - Xcc-8004.355.1 0.41 +0.5 341,657 - Xcc-8004.355.1 0.41 -0.0 341,914 + Xcc-8004.355.1 0.53 +0.3 341,914 + Xcc-8004.355.1 0.53 +0.4 341,914 + Xcc-8004.355.1 0.53 +0.0 341,915 - Xcc-8004.355.1 0.53 -1.5 341,915 - Xcc-8004.355.1 0.53 +0.3 342,252 + Xcc-8004.355.1 0.69 -0.8 342,252 + Xcc-8004.355.1 0.69 +1.7 342,252 + Xcc-8004.355.1 0.69 -2.1 342,253 - Xcc-8004.355.1 0.69 -1.5 342,253 - Xcc-8004.355.1 0.69 -1.7 342,253 - Xcc-8004.355.1 0.69 -2.4 342,253 - Xcc-8004.355.1 0.69 +0.8 342,444 + Xcc-8004.355.1 0.78 +0.2 342,468 - Xcc-8004.355.1 0.79 +0.5 343,140 + Xcc-8004.356.1 0.88 +0.0 343,140 + Xcc-8004.356.1 0.88 -0.8 343,141 - Xcc-8004.356.1 0.89 +0.3 343,141 - Xcc-8004.356.1 0.89 -1.0 343,141 - Xcc-8004.356.1 0.89 -0.9 343,141 - Xcc-8004.356.1 0.89 -0.1 343,259 + Xcc-8004.357.1 0.10 -0.1 343,260 - Xcc-8004.357.1 0.10 -0.3 343,617 + Xcc-8004.357.1 0.86 -1.5 343,650 + -2.3 343,650 + +1.6 343,651 - +1.2 343,651 - +1.6 343,667 + -1.5 343,667 + -0.8 343,667 + -0.3 343,668 - -0.2 343,668 - +1.9 343,668 - +2.1 343,668 - +0.5 343,668 - -1.0 343,668 - +0.3 343,728 + -1.0 343,729 - -0.1 343,814 + +0.4 343,823 + -1.4 343,823 + -0.1 343,824 - +0.7 343,824 - -0.0 343,856 + Xcc-8004.358.1 0.17 +0.2 343,873 + Xcc-8004.358.1 0.22 +1.2 343,874 - Xcc-8004.358.1 0.22 +0.2 343,874 - Xcc-8004.358.1 0.22 +2.1
Or see this region's nucleotide sequence