Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1767.1 and Xcc-8004.1768.1 are separated by 299 nucleotides Xcc-8004.1768.1 and Xcc-8004.1769.1 are separated by 14 nucleotides Xcc-8004.1769.1 and Xcc-8004.1770.1 overlap by 17 nucleotides
Xcc-8004.1767.1: Xcc-8004.1767.1 - cardiolipin synthase, at 1,697,847 to 1,699,409
Xcc-8004.1767.1
Xcc-8004.1768.1: Xcc-8004.1768.1 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 1,699,709 to 1,700,818
Xcc-8004.1768.1
Xcc-8004.1769.1: Xcc-8004.1769.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 1,700,833 to 1,701,660
Xcc-8004.1769.1
Xcc-8004.1770.1: Xcc-8004.1770.1 - hypothetical protein, at 1,701,644 to 1,702,927
Xcc-8004.1770.1
Position (kb) 1699
1700
1701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1698.922 kb on + strand, within Xcc-8004.1767.1 at 1699.094 kb on + strand, within Xcc-8004.1767.1 at 1699.094 kb on + strand, within Xcc-8004.1767.1 at 1699.094 kb on + strand, within Xcc-8004.1767.1 at 1699.095 kb on - strand, within Xcc-8004.1767.1 at 1699.190 kb on - strand, within Xcc-8004.1767.1 at 1699.190 kb on - strand, within Xcc-8004.1767.1 at 1699.230 kb on + strand, within Xcc-8004.1767.1 at 1699.230 kb on + strand, within Xcc-8004.1767.1 at 1699.407 kb on + strand at 1699.483 kb on + strand at 1699.494 kb on - strand at 1699.494 kb on - strand at 1699.529 kb on - strand at 1699.998 kb on - strand, within Xcc-8004.1768.1 at 1700.010 kb on + strand, within Xcc-8004.1768.1 at 1700.841 kb on + strand at 1700.984 kb on + strand, within Xcc-8004.1769.1 at 1701.111 kb on - strand, within Xcc-8004.1769.1 at 1701.135 kb on - strand, within Xcc-8004.1769.1 at 1701.146 kb on + strand, within Xcc-8004.1769.1 at 1701.146 kb on + strand, within Xcc-8004.1769.1 at 1701.146 kb on + strand, within Xcc-8004.1769.1 at 1701.147 kb on - strand, within Xcc-8004.1769.1 at 1701.488 kb on + strand, within Xcc-8004.1769.1 at 1701.488 kb on + strand, within Xcc-8004.1769.1 at 1701.488 kb on + strand, within Xcc-8004.1769.1 at 1701.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,698,922 + Xcc-8004.1767.1 0.69 +1.7 1,699,094 + Xcc-8004.1767.1 0.80 -0.6 1,699,094 + Xcc-8004.1767.1 0.80 -0.6 1,699,094 + Xcc-8004.1767.1 0.80 +0.8 1,699,095 - Xcc-8004.1767.1 0.80 -0.4 1,699,190 - Xcc-8004.1767.1 0.86 +2.4 1,699,190 - Xcc-8004.1767.1 0.86 +0.8 1,699,230 + Xcc-8004.1767.1 0.88 -0.3 1,699,230 + Xcc-8004.1767.1 0.88 +0.1 1,699,407 + +0.5 1,699,483 + -2.4 1,699,494 - +0.9 1,699,494 - +1.5 1,699,529 - +0.8 1,699,998 - Xcc-8004.1768.1 0.26 -0.6 1,700,010 + Xcc-8004.1768.1 0.27 -1.7 1,700,841 + -0.7 1,700,984 + Xcc-8004.1769.1 0.18 +2.0 1,701,111 - Xcc-8004.1769.1 0.34 -2.4 1,701,135 - Xcc-8004.1769.1 0.36 +1.0 1,701,146 + Xcc-8004.1769.1 0.38 -1.0 1,701,146 + Xcc-8004.1769.1 0.38 -0.6 1,701,146 + Xcc-8004.1769.1 0.38 +0.0 1,701,147 - Xcc-8004.1769.1 0.38 +1.0 1,701,488 + Xcc-8004.1769.1 0.79 -0.3 1,701,488 + Xcc-8004.1769.1 0.79 -1.7 1,701,488 + Xcc-8004.1769.1 0.79 +1.1 1,701,759 + +0.4
Or see this region's nucleotide sequence