Strain Fitness in Marinobacter adhaerens HP15 around HP15_3472

Experiment: m.b. Bacitracin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3471 and HP15_3472 are separated by 38 nucleotidesHP15_3472 and HP15_3473 are separated by 53 nucleotides HP15_3471: HP15_3471 - type VI secretion system, FHA domain-containing protein, at 3,658,747 to 3,660,045 _3471 HP15_3472: HP15_3472 - protein containing DUF1305, at 3,660,084 to 3,661,010 _3472 HP15_3473: HP15_3473 - type VI secretion system, VCA0110, at 3,661,064 to 3,662,836 _3473 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -1 0 1 2 3at 3659.295 kb on - strand, within HP15_3471at 3659.298 kb on + strand, within HP15_3471at 3659.332 kb on - strand, within HP15_3471at 3659.413 kb on - strand, within HP15_3471at 3659.457 kb on - strand, within HP15_3471at 3659.542 kb on + strand, within HP15_3471at 3659.542 kb on + strand, within HP15_3471at 3659.550 kb on + strand, within HP15_3471at 3659.560 kb on - strand, within HP15_3471at 3659.637 kb on + strand, within HP15_3471at 3659.691 kb on - strand, within HP15_3471at 3659.710 kb on - strand, within HP15_3471at 3659.720 kb on + strand, within HP15_3471at 3659.800 kb on + strand, within HP15_3471at 3659.904 kb on - strand, within HP15_3471at 3659.973 kb on + strandat 3659.975 kb on + strandat 3659.981 kb on - strandat 3660.117 kb on + strandat 3660.176 kb on + strandat 3660.248 kb on + strand, within HP15_3472at 3660.259 kb on - strand, within HP15_3472at 3660.372 kb on + strand, within HP15_3472at 3660.387 kb on + strand, within HP15_3472at 3660.395 kb on - strand, within HP15_3472at 3660.397 kb on + strand, within HP15_3472at 3660.523 kb on - strand, within HP15_3472at 3660.527 kb on + strand, within HP15_3472at 3660.555 kb on + strand, within HP15_3472at 3660.558 kb on - strand, within HP15_3472at 3660.558 kb on - strand, within HP15_3472at 3660.558 kb on - strand, within HP15_3472at 3660.563 kb on + strand, within HP15_3472at 3660.581 kb on - strand, within HP15_3472at 3660.614 kb on - strand, within HP15_3472at 3660.618 kb on - strand, within HP15_3472at 3660.635 kb on + strand, within HP15_3472at 3660.645 kb on + strand, within HP15_3472at 3660.785 kb on - strand, within HP15_3472at 3660.785 kb on - strand, within HP15_3472at 3660.785 kb on - strand, within HP15_3472at 3660.812 kb on + strand, within HP15_3472at 3660.812 kb on + strand, within HP15_3472at 3660.917 kb on - strand, within HP15_3472at 3661.049 kb on - strandat 3661.096 kb on + strandat 3661.140 kb on - strandat 3661.241 kb on + strandat 3661.273 kb on + strand, within HP15_3473at 3661.301 kb on - strand, within HP15_3473at 3661.313 kb on + strand, within HP15_3473at 3661.313 kb on + strand, within HP15_3473at 3661.350 kb on + strand, within HP15_3473at 3661.416 kb on + strand, within HP15_3473at 3661.419 kb on - strand, within HP15_3473at 3661.494 kb on + strand, within HP15_3473at 3661.604 kb on - strand, within HP15_3473at 3661.630 kb on + strand, within HP15_3473at 3661.721 kb on + strand, within HP15_3473at 3661.729 kb on - strand, within HP15_3473at 3661.746 kb on + strand, within HP15_3473at 3661.767 kb on + strand, within HP15_3473at 3661.784 kb on - strand, within HP15_3473at 3661.831 kb on - strand, within HP15_3473at 3661.832 kb on - strand, within HP15_3473at 3661.839 kb on + strand, within HP15_3473at 3661.847 kb on - strand, within HP15_3473at 3661.964 kb on - strand, within HP15_3473

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 1 mg/ml
remove
3,659,295 - HP15_3471 0.42 -0.1
3,659,298 + HP15_3471 0.42 -0.8
3,659,332 - HP15_3471 0.45 -0.2
3,659,413 - HP15_3471 0.51 -0.3
3,659,457 - HP15_3471 0.55 -0.1
3,659,542 + HP15_3471 0.61 -0.3
3,659,542 + HP15_3471 0.61 +0.4
3,659,550 + HP15_3471 0.62 +0.2
3,659,560 - HP15_3471 0.63 -0.2
3,659,637 + HP15_3471 0.69 +0.6
3,659,691 - HP15_3471 0.73 +0.5
3,659,710 - HP15_3471 0.74 +0.2
3,659,720 + HP15_3471 0.75 -0.1
3,659,800 + HP15_3471 0.81 -0.4
3,659,904 - HP15_3471 0.89 +0.6
3,659,973 + +0.1
3,659,975 + +0.6
3,659,981 - +0.8
3,660,117 + -0.8
3,660,176 + +0.1
3,660,248 + HP15_3472 0.18 +0.2
3,660,259 - HP15_3472 0.19 +0.7
3,660,372 + HP15_3472 0.31 -0.3
3,660,387 + HP15_3472 0.33 -0.2
3,660,395 - HP15_3472 0.34 -0.0
3,660,397 + HP15_3472 0.34 -0.0
3,660,523 - HP15_3472 0.47 +0.6
3,660,527 + HP15_3472 0.48 +0.4
3,660,555 + HP15_3472 0.51 +0.2
3,660,558 - HP15_3472 0.51 +0.2
3,660,558 - HP15_3472 0.51 -0.2
3,660,558 - HP15_3472 0.51 +3.7
3,660,563 + HP15_3472 0.52 +0.3
3,660,581 - HP15_3472 0.54 -1.5
3,660,614 - HP15_3472 0.57 -0.2
3,660,618 - HP15_3472 0.58 -0.4
3,660,635 + HP15_3472 0.59 +0.2
3,660,645 + HP15_3472 0.61 +1.1
3,660,785 - HP15_3472 0.76 +0.4
3,660,785 - HP15_3472 0.76 +0.4
3,660,785 - HP15_3472 0.76 -0.1
3,660,812 + HP15_3472 0.79 +0.0
3,660,812 + HP15_3472 0.79 -0.2
3,660,917 - HP15_3472 0.90 +0.3
3,661,049 - -0.1
3,661,096 + -0.6
3,661,140 - +0.3
3,661,241 + +0.1
3,661,273 + HP15_3473 0.12 +0.4
3,661,301 - HP15_3473 0.13 +1.9
3,661,313 + HP15_3473 0.14 +0.7
3,661,313 + HP15_3473 0.14 -0.4
3,661,350 + HP15_3473 0.16 -0.3
3,661,416 + HP15_3473 0.20 +0.5
3,661,419 - HP15_3473 0.20 +0.4
3,661,494 + HP15_3473 0.24 -0.2
3,661,604 - HP15_3473 0.30 +0.0
3,661,630 + HP15_3473 0.32 -0.8
3,661,721 + HP15_3473 0.37 -0.1
3,661,729 - HP15_3473 0.38 +0.1
3,661,746 + HP15_3473 0.38 +0.2
3,661,767 + HP15_3473 0.40 +0.5
3,661,784 - HP15_3473 0.41 +0.1
3,661,831 - HP15_3473 0.43 -1.2
3,661,832 - HP15_3473 0.43 -0.1
3,661,839 + HP15_3473 0.44 +0.4
3,661,847 - HP15_3473 0.44 +0.4
3,661,964 - HP15_3473 0.51 -0.1

Or see this region's nucleotide sequence