Strain Fitness in Marinobacter adhaerens HP15 around HP15_2696

Experiment: m.b. Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2695 and HP15_2696 are separated by 59 nucleotidesHP15_2696 and HP15_2697 are separated by 327 nucleotides HP15_2695: HP15_2695 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (from data), at 2,847,077 to 2,848,324 _2695 HP15_2696: HP15_2696 - phenylacetate-CoA ligase, at 2,848,384 to 2,849,694 _2696 HP15_2697: HP15_2697 - phenylacetate-CoA oxygenase, PaaG subunit, at 2,850,022 to 2,851,014 _2697 Position (kb) 2848 2849 2850Strain fitness (log2 ratio) -1 0 1at 2847.422 kb on + strand, within HP15_2695at 2847.457 kb on - strand, within HP15_2695at 2847.642 kb on + strand, within HP15_2695at 2847.662 kb on - strand, within HP15_2695at 2847.900 kb on + strand, within HP15_2695at 2847.908 kb on - strand, within HP15_2695at 2847.978 kb on - strand, within HP15_2695at 2848.073 kb on + strand, within HP15_2695at 2848.078 kb on + strand, within HP15_2695at 2848.179 kb on + strand, within HP15_2695at 2848.202 kb on - strandat 2848.280 kb on - strandat 2848.282 kb on + strandat 2848.350 kb on + strandat 2848.374 kb on + strandat 2848.436 kb on + strandat 2848.467 kb on - strandat 2848.522 kb on + strand, within HP15_2696at 2848.706 kb on + strand, within HP15_2696at 2848.706 kb on + strand, within HP15_2696at 2848.777 kb on + strand, within HP15_2696at 2848.781 kb on + strand, within HP15_2696at 2848.798 kb on + strand, within HP15_2696at 2848.810 kb on + strand, within HP15_2696at 2848.813 kb on - strand, within HP15_2696at 2848.873 kb on - strand, within HP15_2696at 2849.046 kb on + strand, within HP15_2696at 2849.100 kb on + strand, within HP15_2696at 2849.134 kb on - strand, within HP15_2696at 2849.254 kb on + strand, within HP15_2696at 2849.256 kb on - strand, within HP15_2696at 2849.303 kb on + strand, within HP15_2696at 2849.311 kb on - strand, within HP15_2696at 2849.491 kb on + strand, within HP15_2696at 2849.545 kb on + strand, within HP15_2696at 2849.616 kb on + strandat 2849.634 kb on - strandat 2849.689 kb on - strandat 2849.716 kb on - strandat 2849.814 kb on - strandat 2849.976 kb on + strandat 2849.985 kb on + strandat 2849.993 kb on - strandat 2850.001 kb on - strandat 2850.065 kb on + strandat 2850.180 kb on + strand, within HP15_2697at 2850.241 kb on - strand, within HP15_2697at 2850.305 kb on + strand, within HP15_2697at 2850.323 kb on - strand, within HP15_2697

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 1 mg/ml
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2,847,422 + HP15_2695 0.28 -0.1
2,847,457 - HP15_2695 0.30 +0.3
2,847,642 + HP15_2695 0.45 +0.6
2,847,662 - HP15_2695 0.47 +0.3
2,847,900 + HP15_2695 0.66 +0.2
2,847,908 - HP15_2695 0.67 -0.4
2,847,978 - HP15_2695 0.72 -0.2
2,848,073 + HP15_2695 0.80 +0.3
2,848,078 + HP15_2695 0.80 -0.6
2,848,179 + HP15_2695 0.88 -0.2
2,848,202 - +0.1
2,848,280 - -0.0
2,848,282 + +0.8
2,848,350 + +0.4
2,848,374 + -0.2
2,848,436 + -0.3
2,848,467 - -0.3
2,848,522 + HP15_2696 0.11 +0.0
2,848,706 + HP15_2696 0.25 +0.1
2,848,706 + HP15_2696 0.25 -0.1
2,848,777 + HP15_2696 0.30 -1.2
2,848,781 + HP15_2696 0.30 +0.0
2,848,798 + HP15_2696 0.32 +0.0
2,848,810 + HP15_2696 0.32 -0.4
2,848,813 - HP15_2696 0.33 +0.1
2,848,873 - HP15_2696 0.37 +0.2
2,849,046 + HP15_2696 0.50 +0.9
2,849,100 + HP15_2696 0.55 -1.0
2,849,134 - HP15_2696 0.57 -0.4
2,849,254 + HP15_2696 0.66 -0.7
2,849,256 - HP15_2696 0.67 -0.5
2,849,303 + HP15_2696 0.70 +0.0
2,849,311 - HP15_2696 0.71 -0.3
2,849,491 + HP15_2696 0.84 -0.6
2,849,545 + HP15_2696 0.89 -0.5
2,849,616 + -0.1
2,849,634 - -0.0
2,849,689 - +0.5
2,849,716 - -0.0
2,849,814 - -0.0
2,849,976 + +0.4
2,849,985 + -0.1
2,849,993 - +0.0
2,850,001 - +0.9
2,850,065 + -1.7
2,850,180 + HP15_2697 0.16 -0.1
2,850,241 - HP15_2697 0.22 +0.2
2,850,305 + HP15_2697 0.28 +0.3
2,850,323 - HP15_2697 0.30 -0.6

Or see this region's nucleotide sequence