Experiment: m.b. Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1399 and HP15_1400 are separated by 30 nucleotides HP15_1400 and HP15_1401 are separated by 78 nucleotides
HP15_1399: HP15_1399 - metal-dependent hydrolase-like protein, at 1,475,369 to 1,476,334
_1399
HP15_1400: HP15_1400 - fructose-bisphosphate aldolase B, at 1,476,365 to 1,477,429
_1400
HP15_1401: HP15_1401 - shikimate/quinate 5-dehydrogenase, at 1,477,508 to 1,479,619
_1401
Position (kb)
1476
1477
1478 Strain fitness (log2 ratio)
-2
-1
0
1 at 1475.453 kb on + strand at 1475.461 kb on - strand at 1475.461 kb on - strand at 1475.499 kb on - strand, within HP15_1399 at 1475.503 kb on - strand, within HP15_1399 at 1475.667 kb on + strand, within HP15_1399 at 1475.675 kb on - strand, within HP15_1399 at 1475.835 kb on - strand, within HP15_1399 at 1475.937 kb on - strand, within HP15_1399 at 1475.969 kb on + strand, within HP15_1399 at 1475.999 kb on + strand, within HP15_1399 at 1476.212 kb on + strand, within HP15_1399 at 1476.340 kb on + strand at 1476.438 kb on + strand at 1476.525 kb on + strand, within HP15_1400 at 1476.526 kb on + strand, within HP15_1400 at 1476.533 kb on - strand, within HP15_1400 at 1476.791 kb on + strand, within HP15_1400 at 1476.814 kb on - strand, within HP15_1400 at 1476.928 kb on - strand, within HP15_1400 at 1477.012 kb on + strand, within HP15_1400 at 1477.034 kb on + strand, within HP15_1400 at 1477.096 kb on + strand, within HP15_1400 at 1477.216 kb on + strand, within HP15_1400 at 1477.238 kb on + strand, within HP15_1400 at 1477.269 kb on + strand, within HP15_1400 at 1477.270 kb on - strand, within HP15_1400 at 1477.392 kb on - strand at 1477.448 kb on - strand at 1477.557 kb on + strand at 1477.577 kb on - strand at 1477.670 kb on + strand at 1477.670 kb on + strand at 1477.670 kb on + strand at 1477.706 kb on + strand at 1478.103 kb on - strand, within HP15_1401 at 1478.103 kb on - strand, within HP15_1401 at 1478.105 kb on + strand, within HP15_1401 at 1478.164 kb on - strand, within HP15_1401 at 1478.203 kb on - strand, within HP15_1401 at 1478.261 kb on + strand, within HP15_1401 at 1478.279 kb on - strand, within HP15_1401 at 1478.400 kb on - strand, within HP15_1401 at 1478.417 kb on - strand, within HP15_1401 at 1478.420 kb on + strand, within HP15_1401
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 1 mg/ml remove 1,475,453 + +0.9 1,475,461 - -1.5 1,475,461 - -0.8 1,475,499 - HP15_1399 0.13 -0.2 1,475,503 - HP15_1399 0.14 +0.1 1,475,667 + HP15_1399 0.31 -0.3 1,475,675 - HP15_1399 0.32 -0.4 1,475,835 - HP15_1399 0.48 +1.1 1,475,937 - HP15_1399 0.59 -0.3 1,475,969 + HP15_1399 0.62 -0.4 1,475,999 + HP15_1399 0.65 +0.4 1,476,212 + HP15_1399 0.87 -1.0 1,476,340 + +0.6 1,476,438 + -0.1 1,476,525 + HP15_1400 0.15 -0.7 1,476,526 + HP15_1400 0.15 +0.0 1,476,533 - HP15_1400 0.16 +0.4 1,476,791 + HP15_1400 0.40 -0.5 1,476,814 - HP15_1400 0.42 -2.4 1,476,928 - HP15_1400 0.53 -0.8 1,477,012 + HP15_1400 0.61 +0.6 1,477,034 + HP15_1400 0.63 -0.6 1,477,096 + HP15_1400 0.69 -0.8 1,477,216 + HP15_1400 0.80 -0.4 1,477,238 + HP15_1400 0.82 -0.4 1,477,269 + HP15_1400 0.85 +0.2 1,477,270 - HP15_1400 0.85 -1.2 1,477,392 - -0.0 1,477,448 - +0.9 1,477,557 + -1.1 1,477,577 - -0.7 1,477,670 + -0.3 1,477,670 + +0.3 1,477,670 + +0.4 1,477,706 + +0.5 1,478,103 - HP15_1401 0.28 -0.1 1,478,103 - HP15_1401 0.28 -0.4 1,478,105 + HP15_1401 0.28 +0.4 1,478,164 - HP15_1401 0.31 -0.5 1,478,203 - HP15_1401 0.33 -1.0 1,478,261 + HP15_1401 0.36 +1.7 1,478,279 - HP15_1401 0.37 -1.6 1,478,400 - HP15_1401 0.42 +0.4 1,478,417 - HP15_1401 0.43 -0.4 1,478,420 + HP15_1401 0.43 +0.3
Or see this region's nucleotide sequence