Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3075

Experiment: Succinate (C)_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3074 and Rru_A3075 are separated by 8 nucleotidesRru_A3075 and Rru_A3076 are separated by 282 nucleotides Rru_A3074: Rru_A3074 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like (NCBI), at 3,539,235 to 3,540,776 _A3074 Rru_A3075: Rru_A3075 - permease YjgP/YjgQ (NCBI), at 3,540,785 to 3,541,885 _A3075 Rru_A3076: Rru_A3076 - Cobalamin adenosyltransferase (NCBI), at 3,542,168 to 3,542,863 _A3076 Position (kb) 3540 3541 3542Strain fitness (log2 ratio) -2 -1 0 1at 3539.786 kb on - strand, within Rru_A3074at 3539.786 kb on - strand, within Rru_A3074at 3540.377 kb on - strand, within Rru_A3074at 3540.377 kb on - strand, within Rru_A3074at 3540.377 kb on - strand, within Rru_A3074at 3540.437 kb on - strand, within Rru_A3074at 3540.437 kb on - strand, within Rru_A3074at 3540.519 kb on - strand, within Rru_A3074at 3540.716 kb on - strandat 3540.716 kb on - strandat 3541.876 kb on - strandat 3542.057 kb on + strandat 3542.057 kb on + strandat 3542.058 kb on - strandat 3542.058 kb on - strandat 3542.058 kb on - strandat 3542.058 kb on - strandat 3542.060 kb on - strandat 3542.060 kb on - strandat 3542.060 kb on - strandat 3542.112 kb on - strandat 3542.190 kb on - strandat 3542.190 kb on - strandat 3542.249 kb on + strand, within Rru_A3076at 3542.249 kb on + strand, within Rru_A3076at 3542.249 kb on + strand, within Rru_A3076at 3542.250 kb on - strand, within Rru_A3076at 3542.250 kb on - strand, within Rru_A3076at 3542.250 kb on - strand, within Rru_A3076at 3542.250 kb on - strand, within Rru_A3076at 3542.270 kb on + strand, within Rru_A3076at 3542.537 kb on - strand, within Rru_A3076at 3542.537 kb on - strand, within Rru_A3076at 3542.583 kb on + strand, within Rru_A3076at 3542.584 kb on - strand, within Rru_A3076at 3542.756 kb on + strand, within Rru_A3076at 3542.777 kb on + strand, within Rru_A3076at 3542.777 kb on + strand, within Rru_A3076at 3542.777 kb on + strand, within Rru_A3076

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
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3,539,786 - Rru_A3074 0.36 +0.1
3,539,786 - Rru_A3074 0.36 -0.3
3,540,377 - Rru_A3074 0.74 -0.3
3,540,377 - Rru_A3074 0.74 +0.3
3,540,377 - Rru_A3074 0.74 -0.5
3,540,437 - Rru_A3074 0.78 -0.5
3,540,437 - Rru_A3074 0.78 -2.1
3,540,519 - Rru_A3074 0.83 -0.1
3,540,716 - -1.0
3,540,716 - -0.2
3,541,876 - -0.9
3,542,057 + +0.2
3,542,057 + +0.6
3,542,058 - -0.4
3,542,058 - -0.6
3,542,058 - -0.2
3,542,058 - +0.2
3,542,060 - +0.0
3,542,060 - -0.3
3,542,060 - -0.2
3,542,112 - -0.0
3,542,190 - +0.3
3,542,190 - -0.2
3,542,249 + Rru_A3076 0.12 -0.2
3,542,249 + Rru_A3076 0.12 -0.5
3,542,249 + Rru_A3076 0.12 -1.3
3,542,250 - Rru_A3076 0.12 +0.1
3,542,250 - Rru_A3076 0.12 +0.2
3,542,250 - Rru_A3076 0.12 -0.8
3,542,250 - Rru_A3076 0.12 -0.2
3,542,270 + Rru_A3076 0.15 -0.2
3,542,537 - Rru_A3076 0.53 +0.5
3,542,537 - Rru_A3076 0.53 -0.3
3,542,583 + Rru_A3076 0.60 -0.3
3,542,584 - Rru_A3076 0.60 -0.6
3,542,756 + Rru_A3076 0.84 -0.8
3,542,777 + Rru_A3076 0.88 -0.8
3,542,777 + Rru_A3076 0.88 -0.4
3,542,777 + Rru_A3076 0.88 -1.0

Or see this region's nucleotide sequence