Experiment: Succinate (C)_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3074 and Rru_A3075 are separated by 8 nucleotides Rru_A3075 and Rru_A3076 are separated by 282 nucleotides
Rru_A3074: Rru_A3074 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like (NCBI), at 3,539,235 to 3,540,776
_A3074
Rru_A3075: Rru_A3075 - permease YjgP/YjgQ (NCBI), at 3,540,785 to 3,541,885
_A3075
Rru_A3076: Rru_A3076 - Cobalamin adenosyltransferase (NCBI), at 3,542,168 to 3,542,863
_A3076
Position (kb)
3540
3541
3542 Strain fitness (log2 ratio)
-2
-1
0
1 at 3539.786 kb on - strand, within Rru_A3074 at 3539.786 kb on - strand, within Rru_A3074 at 3540.377 kb on - strand, within Rru_A3074 at 3540.377 kb on - strand, within Rru_A3074 at 3540.377 kb on - strand, within Rru_A3074 at 3540.437 kb on - strand, within Rru_A3074 at 3540.437 kb on - strand, within Rru_A3074 at 3540.519 kb on - strand, within Rru_A3074 at 3540.716 kb on - strand at 3540.716 kb on - strand at 3541.876 kb on - strand at 3542.057 kb on + strand at 3542.057 kb on + strand at 3542.058 kb on - strand at 3542.058 kb on - strand at 3542.058 kb on - strand at 3542.058 kb on - strand at 3542.060 kb on - strand at 3542.060 kb on - strand at 3542.060 kb on - strand at 3542.112 kb on - strand at 3542.190 kb on - strand at 3542.190 kb on - strand at 3542.249 kb on + strand, within Rru_A3076 at 3542.249 kb on + strand, within Rru_A3076 at 3542.249 kb on + strand, within Rru_A3076 at 3542.250 kb on - strand, within Rru_A3076 at 3542.250 kb on - strand, within Rru_A3076 at 3542.250 kb on - strand, within Rru_A3076 at 3542.250 kb on - strand, within Rru_A3076 at 3542.270 kb on + strand, within Rru_A3076 at 3542.537 kb on - strand, within Rru_A3076 at 3542.537 kb on - strand, within Rru_A3076 at 3542.583 kb on + strand, within Rru_A3076 at 3542.584 kb on - strand, within Rru_A3076 at 3542.756 kb on + strand, within Rru_A3076 at 3542.777 kb on + strand, within Rru_A3076 at 3542.777 kb on + strand, within Rru_A3076 at 3542.777 kb on + strand, within Rru_A3076
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C)_noKan remove 3,539,786 - Rru_A3074 0.36 +0.1 3,539,786 - Rru_A3074 0.36 -0.3 3,540,377 - Rru_A3074 0.74 -0.3 3,540,377 - Rru_A3074 0.74 +0.3 3,540,377 - Rru_A3074 0.74 -0.5 3,540,437 - Rru_A3074 0.78 -0.5 3,540,437 - Rru_A3074 0.78 -2.1 3,540,519 - Rru_A3074 0.83 -0.1 3,540,716 - -1.0 3,540,716 - -0.2 3,541,876 - -0.9 3,542,057 + +0.2 3,542,057 + +0.6 3,542,058 - -0.4 3,542,058 - -0.6 3,542,058 - -0.2 3,542,058 - +0.2 3,542,060 - +0.0 3,542,060 - -0.3 3,542,060 - -0.2 3,542,112 - -0.0 3,542,190 - +0.3 3,542,190 - -0.2 3,542,249 + Rru_A3076 0.12 -0.2 3,542,249 + Rru_A3076 0.12 -0.5 3,542,249 + Rru_A3076 0.12 -1.3 3,542,250 - Rru_A3076 0.12 +0.1 3,542,250 - Rru_A3076 0.12 +0.2 3,542,250 - Rru_A3076 0.12 -0.8 3,542,250 - Rru_A3076 0.12 -0.2 3,542,270 + Rru_A3076 0.15 -0.2 3,542,537 - Rru_A3076 0.53 +0.5 3,542,537 - Rru_A3076 0.53 -0.3 3,542,583 + Rru_A3076 0.60 -0.3 3,542,584 - Rru_A3076 0.60 -0.6 3,542,756 + Rru_A3076 0.84 -0.8 3,542,777 + Rru_A3076 0.88 -0.8 3,542,777 + Rru_A3076 0.88 -0.4 3,542,777 + Rru_A3076 0.88 -1.0
Or see this region's nucleotide sequence