Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2092

Experiment: Succinate (C)_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2090 and Rru_A2091 are separated by 256 nucleotidesRru_A2091 and Rru_A2092 are separated by 62 nucleotidesRru_A2092 and Rru_A2093 are separated by 254 nucleotides Rru_A2090: Rru_A2090 - ABC transporter component (NCBI), at 2,418,224 to 2,418,967 _A2090 Rru_A2091: Rru_A2091 - hypothetical protein (NCBI), at 2,419,224 to 2,419,481 _A2091 Rru_A2092: Rru_A2092 - hypothetical protein (NCBI), at 2,419,544 to 2,419,960 _A2092 Rru_A2093: Rru_A2093 - Methyltransferase FkbM (NCBI), at 2,420,215 to 2,420,973 _A2093 Position (kb) 2419 2420Strain fitness (log2 ratio) -1 0 1 2at 2418.965 kb on + strandat 2419.294 kb on - strand, within Rru_A2091at 2419.302 kb on + strand, within Rru_A2091at 2419.303 kb on - strand, within Rru_A2091at 2419.919 kb on + strandat 2419.919 kb on + strandat 2419.920 kb on - strandat 2419.920 kb on - strandat 2419.920 kb on - strandat 2419.927 kb on - strandat 2419.979 kb on + strandat 2419.981 kb on + strandat 2419.982 kb on - strandat 2420.025 kb on + strandat 2420.327 kb on - strand, within Rru_A2093at 2420.375 kb on + strand, within Rru_A2093at 2420.463 kb on + strand, within Rru_A2093at 2420.539 kb on + strand, within Rru_A2093at 2420.539 kb on + strand, within Rru_A2093at 2420.539 kb on + strand, within Rru_A2093at 2420.539 kb on + strand, within Rru_A2093at 2420.540 kb on - strand, within Rru_A2093at 2420.896 kb on + strand, within Rru_A2093at 2420.896 kb on + strand, within Rru_A2093at 2420.896 kb on + strand, within Rru_A2093at 2420.896 kb on + strand, within Rru_A2093at 2420.896 kb on + strand, within Rru_A2093at 2420.896 kb on + strand, within Rru_A2093at 2420.896 kb on + strand, within Rru_A2093at 2420.896 kb on + strand, within Rru_A2093at 2420.897 kb on - strand, within Rru_A2093at 2420.897 kb on - strand, within Rru_A2093at 2420.897 kb on - strand, within Rru_A2093at 2420.897 kb on - strand, within Rru_A2093at 2420.897 kb on - strand, within Rru_A2093

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
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2,418,965 + -0.0
2,419,294 - Rru_A2091 0.27 -0.0
2,419,302 + Rru_A2091 0.30 -0.6
2,419,303 - Rru_A2091 0.31 -0.9
2,419,919 + +1.6
2,419,919 + +0.3
2,419,920 - +0.3
2,419,920 - -0.1
2,419,920 - +0.1
2,419,927 - -0.2
2,419,979 + +0.0
2,419,981 + +0.2
2,419,982 - -0.3
2,420,025 + -0.1
2,420,327 - Rru_A2093 0.15 -1.2
2,420,375 + Rru_A2093 0.21 +0.7
2,420,463 + Rru_A2093 0.33 +0.1
2,420,539 + Rru_A2093 0.43 +0.0
2,420,539 + Rru_A2093 0.43 +2.6
2,420,539 + Rru_A2093 0.43 +1.0
2,420,539 + Rru_A2093 0.43 -1.0
2,420,540 - Rru_A2093 0.43 -0.3
2,420,896 + Rru_A2093 0.90 -0.1
2,420,896 + Rru_A2093 0.90 +0.2
2,420,896 + Rru_A2093 0.90 +0.1
2,420,896 + Rru_A2093 0.90 -1.1
2,420,896 + Rru_A2093 0.90 +0.6
2,420,896 + Rru_A2093 0.90 +0.1
2,420,896 + Rru_A2093 0.90 -0.4
2,420,896 + Rru_A2093 0.90 -0.6
2,420,897 - Rru_A2093 0.90 +0.3
2,420,897 - Rru_A2093 0.90 +0.3
2,420,897 - Rru_A2093 0.90 +0.0
2,420,897 - Rru_A2093 0.90 +0.9
2,420,897 - Rru_A2093 0.90 +0.2

Or see this region's nucleotide sequence