Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0690

Experiment: Succinate (C)_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0689 and Rru_A0690 are separated by 93 nucleotidesRru_A0690 and Rru_A0691 are separated by 113 nucleotides Rru_A0689: Rru_A0689 - Cysteine--tRNA ligase (NCBI), at 814,140 to 815,519 _A0689 Rru_A0690: Rru_A0690 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 815,613 to 819,173 _A0690 Rru_A0691: Rru_A0691 - Predicted signal transduction protein (NCBI), at 819,287 to 820,453 _A0691 Position (kb) 815 816 817 818 819 820Strain fitness (log2 ratio) -2 -1 0 1 2at 815.517 kb on + strandat 815.518 kb on - strandat 816.153 kb on + strand, within Rru_A0690at 816.154 kb on - strand, within Rru_A0690at 816.171 kb on + strand, within Rru_A0690at 816.171 kb on + strand, within Rru_A0690at 816.171 kb on + strand, within Rru_A0690at 816.243 kb on + strand, within Rru_A0690at 816.243 kb on + strand, within Rru_A0690at 816.243 kb on + strand, within Rru_A0690at 816.243 kb on + strand, within Rru_A0690at 816.244 kb on - strand, within Rru_A0690at 816.244 kb on - strand, within Rru_A0690at 816.244 kb on - strand, within Rru_A0690at 816.244 kb on - strand, within Rru_A0690at 816.509 kb on + strand, within Rru_A0690at 816.538 kb on + strand, within Rru_A0690at 816.539 kb on - strand, within Rru_A0690at 816.827 kb on + strand, within Rru_A0690at 816.827 kb on + strand, within Rru_A0690at 816.828 kb on - strand, within Rru_A0690at 816.828 kb on - strand, within Rru_A0690at 816.915 kb on + strand, within Rru_A0690at 816.924 kb on + strand, within Rru_A0690at 816.924 kb on + strand, within Rru_A0690at 816.925 kb on - strand, within Rru_A0690at 816.925 kb on - strand, within Rru_A0690at 816.933 kb on + strand, within Rru_A0690at 816.933 kb on + strand, within Rru_A0690at 816.990 kb on - strand, within Rru_A0690at 817.088 kb on - strand, within Rru_A0690at 817.160 kb on + strand, within Rru_A0690at 817.160 kb on + strand, within Rru_A0690at 817.161 kb on - strand, within Rru_A0690at 817.161 kb on - strand, within Rru_A0690at 817.200 kb on + strand, within Rru_A0690at 817.201 kb on - strand, within Rru_A0690at 817.201 kb on - strand, within Rru_A0690at 817.201 kb on - strand, within Rru_A0690at 817.201 kb on - strand, within Rru_A0690at 817.545 kb on + strand, within Rru_A0690at 817.545 kb on + strand, within Rru_A0690at 817.881 kb on + strand, within Rru_A0690at 817.882 kb on - strand, within Rru_A0690at 818.074 kb on + strand, within Rru_A0690at 818.074 kb on + strand, within Rru_A0690at 818.074 kb on + strand, within Rru_A0690at 818.074 kb on + strand, within Rru_A0690at 818.075 kb on - strand, within Rru_A0690at 818.075 kb on - strand, within Rru_A0690at 818.280 kb on + strand, within Rru_A0690at 818.280 kb on + strand, within Rru_A0690at 818.451 kb on + strand, within Rru_A0690at 818.451 kb on + strand, within Rru_A0690at 818.451 kb on + strand, within Rru_A0690at 818.452 kb on - strand, within Rru_A0690at 818.452 kb on - strand, within Rru_A0690at 818.454 kb on - strand, within Rru_A0690at 818.454 kb on - strand, within Rru_A0690at 818.463 kb on - strand, within Rru_A0690at 818.582 kb on + strand, within Rru_A0690at 818.583 kb on - strand, within Rru_A0690at 818.590 kb on - strand, within Rru_A0690at 819.171 kb on + strandat 819.172 kb on - strandat 819.222 kb on - strandat 819.226 kb on + strandat 819.226 kb on + strandat 819.262 kb on + strandat 819.263 kb on - strandat 819.319 kb on + strandat 819.320 kb on - strandat 819.320 kb on - strandat 819.540 kb on - strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.587 kb on + strand, within Rru_A0691at 819.588 kb on - strand, within Rru_A0691at 819.588 kb on - strand, within Rru_A0691at 819.725 kb on + strand, within Rru_A0691at 819.726 kb on - strand, within Rru_A0691at 819.726 kb on - strand, within Rru_A0691at 819.766 kb on + strand, within Rru_A0691at 819.767 kb on - strand, within Rru_A0691at 819.767 kb on - strand, within Rru_A0691

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
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815,517 + -0.8
815,518 - -0.5
816,153 + Rru_A0690 0.15 -0.5
816,154 - Rru_A0690 0.15 +0.3
816,171 + Rru_A0690 0.16 +0.2
816,171 + Rru_A0690 0.16 +1.7
816,171 + Rru_A0690 0.16 -0.1
816,243 + Rru_A0690 0.18 -0.4
816,243 + Rru_A0690 0.18 -0.4
816,243 + Rru_A0690 0.18 -0.3
816,243 + Rru_A0690 0.18 +0.5
816,244 - Rru_A0690 0.18 -0.4
816,244 - Rru_A0690 0.18 -0.1
816,244 - Rru_A0690 0.18 +1.9
816,244 - Rru_A0690 0.18 +0.4
816,509 + Rru_A0690 0.25 +1.3
816,538 + Rru_A0690 0.26 +0.4
816,539 - Rru_A0690 0.26 +0.1
816,827 + Rru_A0690 0.34 +0.6
816,827 + Rru_A0690 0.34 -0.9
816,828 - Rru_A0690 0.34 -0.2
816,828 - Rru_A0690 0.34 -0.8
816,915 + Rru_A0690 0.37 -0.0
816,924 + Rru_A0690 0.37 -0.3
816,924 + Rru_A0690 0.37 -0.9
816,925 - Rru_A0690 0.37 +1.4
816,925 - Rru_A0690 0.37 +0.7
816,933 + Rru_A0690 0.37 +0.4
816,933 + Rru_A0690 0.37 -0.1
816,990 - Rru_A0690 0.39 -0.2
817,088 - Rru_A0690 0.41 +0.2
817,160 + Rru_A0690 0.43 +0.2
817,160 + Rru_A0690 0.43 -0.3
817,161 - Rru_A0690 0.43 -0.1
817,161 - Rru_A0690 0.43 +0.1
817,200 + Rru_A0690 0.45 -0.2
817,201 - Rru_A0690 0.45 -1.0
817,201 - Rru_A0690 0.45 -0.8
817,201 - Rru_A0690 0.45 +0.0
817,201 - Rru_A0690 0.45 -0.7
817,545 + Rru_A0690 0.54 +0.1
817,545 + Rru_A0690 0.54 -0.2
817,881 + Rru_A0690 0.64 -1.0
817,882 - Rru_A0690 0.64 +0.4
818,074 + Rru_A0690 0.69 -0.5
818,074 + Rru_A0690 0.69 -0.1
818,074 + Rru_A0690 0.69 -1.5
818,074 + Rru_A0690 0.69 -0.3
818,075 - Rru_A0690 0.69 -1.1
818,075 - Rru_A0690 0.69 -0.1
818,280 + Rru_A0690 0.75 +0.1
818,280 + Rru_A0690 0.75 +0.2
818,451 + Rru_A0690 0.80 -0.3
818,451 + Rru_A0690 0.80 -0.3
818,451 + Rru_A0690 0.80 -0.1
818,452 - Rru_A0690 0.80 -0.3
818,452 - Rru_A0690 0.80 +0.2
818,454 - Rru_A0690 0.80 -0.3
818,454 - Rru_A0690 0.80 -0.8
818,463 - Rru_A0690 0.80 +0.0
818,582 + Rru_A0690 0.83 -0.8
818,583 - Rru_A0690 0.83 -0.2
818,590 - Rru_A0690 0.84 -0.0
819,171 + -0.1
819,172 - +0.2
819,222 - +0.2
819,226 + +0.3
819,226 + +1.4
819,262 + -0.7
819,263 - -0.4
819,319 + -1.4
819,320 - -0.3
819,320 - +0.2
819,540 - Rru_A0691 0.22 -0.2
819,587 + Rru_A0691 0.26 -0.0
819,587 + Rru_A0691 0.26 +1.4
819,587 + Rru_A0691 0.26 -0.4
819,587 + Rru_A0691 0.26 -0.4
819,587 + Rru_A0691 0.26 -0.2
819,588 - Rru_A0691 0.26 +0.4
819,588 - Rru_A0691 0.26 -0.2
819,725 + Rru_A0691 0.38 -0.0
819,726 - Rru_A0691 0.38 +0.0
819,726 - Rru_A0691 0.38 -1.1
819,766 + Rru_A0691 0.41 +0.0
819,767 - Rru_A0691 0.41 -1.9
819,767 - Rru_A0691 0.41 +0.4

Or see this region's nucleotide sequence