Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0499

Experiment: Succinate (C)_noKan

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0497 and Rru_A0498 are separated by 61 nucleotidesRru_A0498 and Rru_A0499 overlap by 4 nucleotidesRru_A0499 and Rru_A0500 are separated by 111 nucleotides Rru_A0497: Rru_A0497 - ABC transporter component (NCBI), at 582,269 to 583,369 _A0497 Rru_A0498: Rru_A0498 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 583,431 to 584,213 _A0498 Rru_A0499: Rru_A0499 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 584,210 to 585,082 _A0499 Rru_A0500: Rru_A0500 - extracellular solute-binding protein, family 1 (NCBI), at 585,194 to 586,297 _A0500 Position (kb) 584 585 586Strain fitness (log2 ratio) -1 0 1 2at 583.323 kb on + strandat 583.323 kb on + strandat 583.324 kb on - strandat 583.324 kb on - strandat 583.324 kb on - strandat 583.324 kb on - strandat 583.351 kb on + strandat 583.410 kb on - strandat 583.556 kb on + strand, within Rru_A0498at 583.568 kb on - strand, within Rru_A0498at 583.568 kb on - strand, within Rru_A0498at 583.568 kb on - strand, within Rru_A0498at 583.668 kb on - strand, within Rru_A0498at 583.780 kb on + strand, within Rru_A0498at 583.780 kb on + strand, within Rru_A0498at 583.781 kb on - strand, within Rru_A0498at 583.781 kb on - strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.784 kb on + strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.785 kb on - strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.786 kb on + strand, within Rru_A0498at 583.787 kb on - strand, within Rru_A0498at 583.787 kb on - strand, within Rru_A0498at 583.787 kb on - strand, within Rru_A0498at 583.807 kb on + strand, within Rru_A0498at 583.807 kb on + strand, within Rru_A0498at 583.888 kb on + strand, within Rru_A0498at 583.984 kb on + strand, within Rru_A0498at 583.985 kb on - strand, within Rru_A0498at 584.085 kb on - strand, within Rru_A0498at 584.107 kb on + strand, within Rru_A0498at 584.107 kb on + strand, within Rru_A0498at 584.107 kb on + strand, within Rru_A0498at 584.167 kb on + strandat 584.167 kb on + strandat 584.168 kb on - strandat 584.254 kb on + strandat 584.254 kb on + strandat 584.255 kb on - strandat 584.255 kb on - strandat 584.256 kb on + strandat 584.256 kb on + strandat 584.256 kb on + strandat 584.256 kb on + strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.257 kb on - strandat 584.308 kb on - strand, within Rru_A0499at 584.352 kb on + strand, within Rru_A0499at 584.352 kb on + strand, within Rru_A0499at 584.352 kb on + strand, within Rru_A0499at 584.353 kb on - strand, within Rru_A0499at 584.353 kb on - strand, within Rru_A0499at 584.397 kb on + strand, within Rru_A0499at 584.397 kb on + strand, within Rru_A0499at 584.493 kb on + strand, within Rru_A0499at 584.494 kb on - strand, within Rru_A0499at 584.598 kb on + strand, within Rru_A0499at 584.599 kb on - strand, within Rru_A0499at 584.599 kb on - strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.604 kb on + strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.605 kb on - strand, within Rru_A0499at 584.652 kb on + strand, within Rru_A0499at 584.652 kb on + strand, within Rru_A0499at 584.652 kb on + strand, within Rru_A0499at 584.653 kb on - strand, within Rru_A0499at 584.693 kb on + strand, within Rru_A0499at 584.693 kb on + strand, within Rru_A0499at 584.693 kb on + strand, within Rru_A0499at 584.834 kb on + strand, within Rru_A0499at 584.835 kb on - strand, within Rru_A0499at 584.892 kb on + strand, within Rru_A0499at 584.893 kb on - strand, within Rru_A0499at 584.893 kb on - strand, within Rru_A0499at 584.893 kb on - strand, within Rru_A0499at 585.015 kb on + strandat 585.016 kb on - strandat 585.082 kb on + strandat 585.082 kb on + strandat 585.082 kb on + strandat 585.083 kb on - strandat 585.196 kb on - strandat 585.196 kb on - strandat 585.196 kb on - strandat 585.196 kb on - strandat 585.291 kb on + strandat 585.379 kb on - strand, within Rru_A0500at 585.379 kb on - strand, within Rru_A0500at 585.414 kb on + strand, within Rru_A0500at 585.414 kb on + strand, within Rru_A0500at 585.420 kb on + strand, within Rru_A0500at 585.421 kb on - strand, within Rru_A0500at 585.421 kb on - strand, within Rru_A0500at 585.459 kb on + strand, within Rru_A0500at 585.459 kb on + strand, within Rru_A0500at 585.459 kb on + strand, within Rru_A0500at 585.480 kb on + strand, within Rru_A0500at 585.480 kb on + strand, within Rru_A0500at 585.481 kb on - strand, within Rru_A0500at 585.565 kb on + strand, within Rru_A0500at 585.565 kb on + strand, within Rru_A0500at 585.565 kb on + strand, within Rru_A0500at 585.565 kb on + strand, within Rru_A0500at 585.566 kb on - strand, within Rru_A0500at 585.566 kb on - strand, within Rru_A0500at 585.567 kb on + strand, within Rru_A0500at 585.567 kb on + strand, within Rru_A0500at 585.568 kb on - strand, within Rru_A0500at 585.568 kb on - strand, within Rru_A0500at 585.568 kb on - strand, within Rru_A0500at 585.568 kb on - strand, within Rru_A0500at 585.729 kb on + strand, within Rru_A0500at 585.730 kb on - strand, within Rru_A0500at 585.793 kb on - strand, within Rru_A0500at 585.793 kb on - strand, within Rru_A0500at 585.793 kb on - strand, within Rru_A0500at 585.873 kb on + strand, within Rru_A0500at 585.873 kb on + strand, within Rru_A0500at 585.873 kb on + strand, within Rru_A0500at 585.876 kb on + strand, within Rru_A0500at 585.876 kb on + strand, within Rru_A0500at 585.877 kb on - strand, within Rru_A0500at 585.877 kb on - strand, within Rru_A0500at 585.944 kb on - strand, within Rru_A0500at 586.028 kb on - strand, within Rru_A0500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
remove
583,323 + -0.7
583,323 + +0.0
583,324 - -0.4
583,324 - -1.2
583,324 - +0.9
583,324 - -0.3
583,351 + -0.0
583,410 - +0.7
583,556 + Rru_A0498 0.16 -0.6
583,568 - Rru_A0498 0.17 -0.1
583,568 - Rru_A0498 0.17 -0.3
583,568 - Rru_A0498 0.17 -0.2
583,668 - Rru_A0498 0.30 -0.5
583,780 + Rru_A0498 0.45 +0.3
583,780 + Rru_A0498 0.45 +0.5
583,781 - Rru_A0498 0.45 -0.0
583,781 - Rru_A0498 0.45 -0.1
583,784 + Rru_A0498 0.45 -1.2
583,784 + Rru_A0498 0.45 -0.4
583,784 + Rru_A0498 0.45 +1.2
583,784 + Rru_A0498 0.45 -0.0
583,784 + Rru_A0498 0.45 +0.5
583,784 + Rru_A0498 0.45 +0.2
583,784 + Rru_A0498 0.45 -1.4
583,785 - Rru_A0498 0.45 -0.1
583,785 - Rru_A0498 0.45 +0.3
583,785 - Rru_A0498 0.45 -0.5
583,785 - Rru_A0498 0.45 -0.2
583,785 - Rru_A0498 0.45 -0.3
583,785 - Rru_A0498 0.45 +0.3
583,785 - Rru_A0498 0.45 -0.4
583,785 - Rru_A0498 0.45 -0.3
583,785 - Rru_A0498 0.45 +0.1
583,785 - Rru_A0498 0.45 -0.0
583,785 - Rru_A0498 0.45 -0.1
583,785 - Rru_A0498 0.45 +1.8
583,786 + Rru_A0498 0.45 +0.0
583,786 + Rru_A0498 0.45 -0.5
583,786 + Rru_A0498 0.45 -0.0
583,786 + Rru_A0498 0.45 +0.1
583,786 + Rru_A0498 0.45 +0.2
583,787 - Rru_A0498 0.45 -0.2
583,787 - Rru_A0498 0.45 -0.5
583,787 - Rru_A0498 0.45 -0.3
583,807 + Rru_A0498 0.48 -1.0
583,807 + Rru_A0498 0.48 -0.1
583,888 + Rru_A0498 0.58 +0.7
583,984 + Rru_A0498 0.71 +0.1
583,985 - Rru_A0498 0.71 -0.8
584,085 - Rru_A0498 0.84 -1.1
584,107 + Rru_A0498 0.86 +0.0
584,107 + Rru_A0498 0.86 +0.6
584,107 + Rru_A0498 0.86 +0.1
584,167 + -0.1
584,167 + +0.4
584,168 - -0.0
584,254 + +0.0
584,254 + -0.4
584,255 - -0.9
584,255 - -0.1
584,256 + -0.1
584,256 + -0.2
584,256 + -0.1
584,256 + +0.5
584,257 - +1.1
584,257 - +0.3
584,257 - -0.4
584,257 - +0.3
584,257 - -0.6
584,257 - -0.7
584,257 - +0.6
584,308 - Rru_A0499 0.11 +0.2
584,352 + Rru_A0499 0.16 -0.1
584,352 + Rru_A0499 0.16 +0.6
584,352 + Rru_A0499 0.16 -0.3
584,353 - Rru_A0499 0.16 -0.0
584,353 - Rru_A0499 0.16 +0.6
584,397 + Rru_A0499 0.21 -0.7
584,397 + Rru_A0499 0.21 -0.3
584,493 + Rru_A0499 0.32 -0.5
584,494 - Rru_A0499 0.33 +0.8
584,598 + Rru_A0499 0.44 -0.6
584,599 - Rru_A0499 0.45 +0.4
584,599 - Rru_A0499 0.45 -0.9
584,604 + Rru_A0499 0.45 -0.1
584,604 + Rru_A0499 0.45 +0.4
584,604 + Rru_A0499 0.45 -0.7
584,604 + Rru_A0499 0.45 +0.5
584,604 + Rru_A0499 0.45 -0.8
584,604 + Rru_A0499 0.45 -0.5
584,604 + Rru_A0499 0.45 +0.3
584,604 + Rru_A0499 0.45 -0.9
584,605 - Rru_A0499 0.45 +0.5
584,605 - Rru_A0499 0.45 -0.2
584,605 - Rru_A0499 0.45 +0.3
584,605 - Rru_A0499 0.45 +0.4
584,605 - Rru_A0499 0.45 -0.3
584,652 + Rru_A0499 0.51 +0.9
584,652 + Rru_A0499 0.51 -0.1
584,652 + Rru_A0499 0.51 -0.3
584,653 - Rru_A0499 0.51 +0.1
584,693 + Rru_A0499 0.55 -0.1
584,693 + Rru_A0499 0.55 -0.2
584,693 + Rru_A0499 0.55 -0.3
584,834 + Rru_A0499 0.71 -0.2
584,835 - Rru_A0499 0.72 -1.2
584,892 + Rru_A0499 0.78 -0.3
584,893 - Rru_A0499 0.78 +0.4
584,893 - Rru_A0499 0.78 -0.0
584,893 - Rru_A0499 0.78 +0.7
585,015 + +0.9
585,016 - -0.6
585,082 + -0.1
585,082 + +0.2
585,082 + -0.9
585,083 - +0.1
585,196 - -0.4
585,196 - -0.2
585,196 - -0.2
585,196 - -0.2
585,291 + -0.6
585,379 - Rru_A0500 0.17 +0.2
585,379 - Rru_A0500 0.17 -0.2
585,414 + Rru_A0500 0.20 +0.1
585,414 + Rru_A0500 0.20 +0.1
585,420 + Rru_A0500 0.20 +1.4
585,421 - Rru_A0500 0.21 +2.1
585,421 - Rru_A0500 0.21 -0.3
585,459 + Rru_A0500 0.24 +0.7
585,459 + Rru_A0500 0.24 -1.1
585,459 + Rru_A0500 0.24 -0.4
585,480 + Rru_A0500 0.26 -0.8
585,480 + Rru_A0500 0.26 -0.2
585,481 - Rru_A0500 0.26 -0.2
585,565 + Rru_A0500 0.34 -0.6
585,565 + Rru_A0500 0.34 -0.5
585,565 + Rru_A0500 0.34 +0.5
585,565 + Rru_A0500 0.34 +1.0
585,566 - Rru_A0500 0.34 -0.1
585,566 - Rru_A0500 0.34 +1.4
585,567 + Rru_A0500 0.34 -0.3
585,567 + Rru_A0500 0.34 +0.1
585,568 - Rru_A0500 0.34 +0.0
585,568 - Rru_A0500 0.34 +0.5
585,568 - Rru_A0500 0.34 +0.3
585,568 - Rru_A0500 0.34 -1.0
585,729 + Rru_A0500 0.48 -0.2
585,730 - Rru_A0500 0.49 -0.8
585,793 - Rru_A0500 0.54 -0.0
585,793 - Rru_A0500 0.54 -0.0
585,793 - Rru_A0500 0.54 -0.7
585,873 + Rru_A0500 0.62 +1.8
585,873 + Rru_A0500 0.62 +0.2
585,873 + Rru_A0500 0.62 +0.0
585,876 + Rru_A0500 0.62 -0.2
585,876 + Rru_A0500 0.62 -0.0
585,877 - Rru_A0500 0.62 -0.9
585,877 - Rru_A0500 0.62 -0.2
585,944 - Rru_A0500 0.68 +0.2
586,028 - Rru_A0500 0.76 +0.1

Or see this region's nucleotide sequence