Experiment: Succinate (C)_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0427 and Rru_A0428 are separated by 245 nucleotides Rru_A0428 and Rru_A0429 are separated by 12 nucleotides Rru_A0429 and Rru_A0430 are separated by 80 nucleotides
Rru_A0427: Rru_A0427 - Short-chain dehydrogenase/reductase SDR (NCBI), at 499,592 to 500,362
_A0427
Rru_A0428: Rru_A0428 - hypothetical protein (NCBI), at 500,608 to 501,495
_A0428
Rru_A0429: Rru_A0429 - Guanylate kinase (NCBI), at 501,508 to 502,164
_A0429
Rru_A0430: Rru_A0430 - Ribonuclease BN (NCBI), at 502,245 to 503,186
_A0430
Position (kb) 500
501
502 Strain fitness (log2 ratio) -1
0
1
2
3 at 499.908 kb on + strand, within Rru_A0427 at 499.908 kb on + strand, within Rru_A0427 at 499.908 kb on + strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 499.909 kb on - strand, within Rru_A0427 at 500.292 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.393 kb on + strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.394 kb on - strand at 500.395 kb on + strand at 500.395 kb on + strand at 500.395 kb on + strand at 500.396 kb on - strand at 500.497 kb on - strand at 500.497 kb on - strand at 500.516 kb on - strand at 500.527 kb on - strand at 500.527 kb on - strand at 502.162 kb on + strand at 502.163 kb on - strand at 502.276 kb on + strand at 502.276 kb on + strand at 502.277 kb on - strand at 502.277 kb on - strand at 502.277 kb on - strand at 502.449 kb on + strand, within Rru_A0430 at 502.449 kb on + strand, within Rru_A0430 at 502.450 kb on - strand, within Rru_A0430
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C)_noKan remove 499,908 + Rru_A0427 0.41 +0.4 499,908 + Rru_A0427 0.41 -0.5 499,908 + Rru_A0427 0.41 -0.3 499,909 - Rru_A0427 0.41 +0.5 499,909 - Rru_A0427 0.41 +0.2 499,909 - Rru_A0427 0.41 +0.5 499,909 - Rru_A0427 0.41 +0.2 499,909 - Rru_A0427 0.41 -0.1 500,292 + -0.3 500,393 + +0.1 500,393 + +0.4 500,393 + -1.2 500,393 + -0.4 500,394 - -0.6 500,394 - -0.3 500,394 - +0.5 500,394 - -0.5 500,394 - +0.0 500,394 - -0.2 500,394 - -0.2 500,394 - -0.1 500,394 - -0.3 500,394 - -0.6 500,395 + +0.1 500,395 + +2.8 500,395 + -0.3 500,396 - +0.4 500,497 - -0.7 500,497 - +0.1 500,516 - -0.3 500,527 - +0.0 500,527 - -0.1 502,162 + -0.3 502,163 - -0.1 502,276 + -0.1 502,276 + +0.3 502,277 - -0.1 502,277 - -0.0 502,277 - -0.1 502,449 + Rru_A0430 0.22 -1.0 502,449 + Rru_A0430 0.22 +0.0 502,450 - Rru_A0430 0.22 -0.4
Or see this region's nucleotide sequence