Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0032

Experiment: Succinate (C)_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0031 and Rru_B0032 are separated by 82 nucleotidesRru_B0032 and Rru_B0033 are separated by 102 nucleotidesRru_B0033 and Rru_B0034 are separated by 118 nucleotides Rru_B0031: Rru_B0031 - hypothetical protein (NCBI), at 30,461 to 31,993 _B0031 Rru_B0032: Rru_B0032 - hypothetical protein (NCBI), at 32,076 to 32,378 _B0032 Rru_B0033: Rru_B0033 - hypothetical protein (NCBI), at 32,481 to 33,188 _B0033 Rru_B0034: Rru_B0034 - hypothetical protein (NCBI), at 33,307 to 33,534 _B0034 Position (kb) 32 33Strain fitness (log2 ratio) -2 -1 0 1 2 3at 31.102 kb on + strand, within Rru_B0031at 31.102 kb on + strand, within Rru_B0031at 31.103 kb on - strand, within Rru_B0031at 31.103 kb on - strand, within Rru_B0031at 31.131 kb on + strand, within Rru_B0031at 31.131 kb on + strand, within Rru_B0031at 31.131 kb on + strand, within Rru_B0031at 31.132 kb on - strand, within Rru_B0031at 31.132 kb on - strand, within Rru_B0031at 31.132 kb on - strand, within Rru_B0031at 31.291 kb on - strand, within Rru_B0031at 31.291 kb on - strand, within Rru_B0031at 31.317 kb on + strand, within Rru_B0031at 31.318 kb on - strand, within Rru_B0031at 31.318 kb on - strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.332 kb on + strand, within Rru_B0031at 31.395 kb on + strand, within Rru_B0031at 31.395 kb on + strand, within Rru_B0031at 31.396 kb on - strand, within Rru_B0031at 31.539 kb on + strand, within Rru_B0031at 31.539 kb on + strand, within Rru_B0031at 31.539 kb on + strand, within Rru_B0031at 31.539 kb on + strand, within Rru_B0031at 31.540 kb on - strand, within Rru_B0031at 31.540 kb on - strand, within Rru_B0031at 31.540 kb on - strand, within Rru_B0031at 31.540 kb on - strand, within Rru_B0031at 31.548 kb on + strand, within Rru_B0031at 31.548 kb on + strand, within Rru_B0031at 31.548 kb on + strand, within Rru_B0031at 31.548 kb on + strand, within Rru_B0031at 31.548 kb on + strand, within Rru_B0031at 31.549 kb on - strand, within Rru_B0031at 31.549 kb on - strand, within Rru_B0031at 31.549 kb on - strand, within Rru_B0031at 31.549 kb on - strand, within Rru_B0031at 31.626 kb on + strand, within Rru_B0031at 31.626 kb on + strand, within Rru_B0031at 31.626 kb on + strand, within Rru_B0031at 31.626 kb on + strand, within Rru_B0031at 31.626 kb on + strand, within Rru_B0031at 31.626 kb on + strand, within Rru_B0031at 31.626 kb on + strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.627 kb on - strand, within Rru_B0031at 31.854 kb on + strandat 31.938 kb on + strandat 31.939 kb on - strandat 31.951 kb on + strandat 31.951 kb on + strandat 31.951 kb on + strandat 31.951 kb on + strandat 31.951 kb on + strandat 31.952 kb on - strandat 31.952 kb on - strandat 31.952 kb on - strandat 31.953 kb on + strandat 31.954 kb on - strandat 31.971 kb on + strandat 31.971 kb on + strandat 31.971 kb on + strandat 31.971 kb on + strandat 31.971 kb on + strandat 31.971 kb on + strandat 31.971 kb on + strandat 31.972 kb on - strandat 31.972 kb on - strandat 31.972 kb on - strandat 31.972 kb on - strandat 31.972 kb on - strandat 31.972 kb on - strandat 32.013 kb on + strandat 32.013 kb on + strandat 32.014 kb on - strandat 32.029 kb on + strandat 32.030 kb on - strandat 32.030 kb on - strandat 32.058 kb on + strandat 32.059 kb on - strandat 32.059 kb on - strandat 32.128 kb on + strand, within Rru_B0032at 32.129 kb on - strand, within Rru_B0032at 32.129 kb on - strand, within Rru_B0032at 32.180 kb on + strand, within Rru_B0032at 32.180 kb on + strand, within Rru_B0032at 32.180 kb on + strand, within Rru_B0032at 32.180 kb on + strand, within Rru_B0032at 32.180 kb on + strand, within Rru_B0032at 32.181 kb on - strand, within Rru_B0032at 32.181 kb on - strand, within Rru_B0032at 32.181 kb on - strand, within Rru_B0032at 32.181 kb on - strand, within Rru_B0032at 32.239 kb on + strand, within Rru_B0032at 32.239 kb on + strand, within Rru_B0032at 32.240 kb on - strand, within Rru_B0032at 32.381 kb on + strandat 32.381 kb on + strandat 32.381 kb on + strandat 32.381 kb on + strandat 32.381 kb on + strandat 32.382 kb on - strandat 32.417 kb on + strandat 32.418 kb on - strandat 32.492 kb on + strandat 32.502 kb on - strandat 32.711 kb on - strand, within Rru_B0033at 32.711 kb on - strand, within Rru_B0033at 32.764 kb on + strand, within Rru_B0033at 32.819 kb on + strand, within Rru_B0033at 32.819 kb on + strand, within Rru_B0033at 32.820 kb on - strand, within Rru_B0033at 32.820 kb on - strand, within Rru_B0033at 32.828 kb on + strand, within Rru_B0033at 32.828 kb on + strand, within Rru_B0033at 32.828 kb on + strand, within Rru_B0033at 32.829 kb on - strand, within Rru_B0033at 32.830 kb on + strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.851 kb on + strand, within Rru_B0033at 32.851 kb on + strand, within Rru_B0033at 32.851 kb on + strand, within Rru_B0033at 32.852 kb on - strand, within Rru_B0033at 32.852 kb on - strand, within Rru_B0033at 32.867 kb on + strand, within Rru_B0033at 32.867 kb on + strand, within Rru_B0033at 32.868 kb on - strand, within Rru_B0033at 32.868 kb on - strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.870 kb on - strand, within Rru_B0033at 32.870 kb on - strand, within Rru_B0033at 32.870 kb on - strand, within Rru_B0033at 32.870 kb on - strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.882 kb on - strand, within Rru_B0033at 32.929 kb on + strand, within Rru_B0033at 32.929 kb on + strand, within Rru_B0033at 32.929 kb on + strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 33.028 kb on + strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.201 kb on - strandat 33.247 kb on + strandat 33.248 kb on - strandat 33.271 kb on + strandat 33.273 kb on + strandat 33.275 kb on + strandat 33.275 kb on + strandat 33.275 kb on + strandat 33.276 kb on - strandat 33.276 kb on - strandat 33.276 kb on - strandat 33.278 kb on + strandat 33.285 kb on + strandat 33.286 kb on - strandat 33.287 kb on + strandat 33.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
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31,102 + Rru_B0031 0.42 +0.4
31,102 + Rru_B0031 0.42 +0.4
31,103 - Rru_B0031 0.42 +2.4
31,103 - Rru_B0031 0.42 -1.3
31,131 + Rru_B0031 0.44 +2.0
31,131 + Rru_B0031 0.44 +0.0
31,131 + Rru_B0031 0.44 -0.2
31,132 - Rru_B0031 0.44 -0.7
31,132 - Rru_B0031 0.44 +1.0
31,132 - Rru_B0031 0.44 +0.0
31,291 - Rru_B0031 0.54 -0.0
31,291 - Rru_B0031 0.54 -1.2
31,317 + Rru_B0031 0.56 +1.3
31,318 - Rru_B0031 0.56 -0.0
31,318 - Rru_B0031 0.56 -0.4
31,332 + Rru_B0031 0.57 -0.2
31,332 + Rru_B0031 0.57 -0.4
31,332 + Rru_B0031 0.57 -0.7
31,332 + Rru_B0031 0.57 +0.1
31,332 + Rru_B0031 0.57 +1.1
31,332 + Rru_B0031 0.57 +1.2
31,332 + Rru_B0031 0.57 +1.2
31,395 + Rru_B0031 0.61 -0.7
31,395 + Rru_B0031 0.61 +2.4
31,396 - Rru_B0031 0.61 -0.6
31,539 + Rru_B0031 0.70 +0.3
31,539 + Rru_B0031 0.70 +2.4
31,539 + Rru_B0031 0.70 +0.7
31,539 + Rru_B0031 0.70 -0.4
31,540 - Rru_B0031 0.70 +0.8
31,540 - Rru_B0031 0.70 -1.4
31,540 - Rru_B0031 0.70 +0.1
31,540 - Rru_B0031 0.70 -0.4
31,548 + Rru_B0031 0.71 -0.4
31,548 + Rru_B0031 0.71 +0.1
31,548 + Rru_B0031 0.71 -0.6
31,548 + Rru_B0031 0.71 -0.2
31,548 + Rru_B0031 0.71 +0.8
31,549 - Rru_B0031 0.71 +0.1
31,549 - Rru_B0031 0.71 -0.3
31,549 - Rru_B0031 0.71 +0.2
31,549 - Rru_B0031 0.71 +0.8
31,626 + Rru_B0031 0.76 -0.8
31,626 + Rru_B0031 0.76 +0.4
31,626 + Rru_B0031 0.76 +1.3
31,626 + Rru_B0031 0.76 +0.2
31,626 + Rru_B0031 0.76 +0.7
31,626 + Rru_B0031 0.76 +0.2
31,626 + Rru_B0031 0.76 -0.3
31,627 - Rru_B0031 0.76 -0.8
31,627 - Rru_B0031 0.76 +1.2
31,627 - Rru_B0031 0.76 +0.1
31,627 - Rru_B0031 0.76 +1.4
31,627 - Rru_B0031 0.76 +0.0
31,627 - Rru_B0031 0.76 -1.3
31,627 - Rru_B0031 0.76 +0.0
31,627 - Rru_B0031 0.76 -0.0
31,627 - Rru_B0031 0.76 +1.9
31,627 - Rru_B0031 0.76 +0.1
31,627 - Rru_B0031 0.76 +0.9
31,627 - Rru_B0031 0.76 +0.2
31,627 - Rru_B0031 0.76 -0.2
31,854 + -1.3
31,938 + -0.8
31,939 - -0.1
31,951 + -0.5
31,951 + +0.1
31,951 + -1.2
31,951 + +0.1
31,951 + +0.4
31,952 - -1.7
31,952 - +0.4
31,952 - -0.3
31,953 + +0.4
31,954 - -0.8
31,971 + -0.7
31,971 + -0.4
31,971 + -0.4
31,971 + +0.4
31,971 + -0.4
31,971 + -0.2
31,971 + -0.2
31,972 - -0.2
31,972 - +0.6
31,972 - +1.4
31,972 - -0.4
31,972 - -0.7
31,972 - -0.5
32,013 + +0.4
32,013 + +0.8
32,014 - -0.4
32,029 + +0.1
32,030 - -0.1
32,030 - +0.6
32,058 + +0.9
32,059 - -0.5
32,059 - +0.1
32,128 + Rru_B0032 0.17 +0.8
32,129 - Rru_B0032 0.17 -2.5
32,129 - Rru_B0032 0.17 +1.4
32,180 + Rru_B0032 0.34 -0.6
32,180 + Rru_B0032 0.34 +0.1
32,180 + Rru_B0032 0.34 -1.1
32,180 + Rru_B0032 0.34 +2.0
32,180 + Rru_B0032 0.34 +1.1
32,181 - Rru_B0032 0.35 -0.9
32,181 - Rru_B0032 0.35 -0.2
32,181 - Rru_B0032 0.35 -0.3
32,181 - Rru_B0032 0.35 -0.7
32,239 + Rru_B0032 0.54 -0.2
32,239 + Rru_B0032 0.54 -1.3
32,240 - Rru_B0032 0.54 +1.2
32,381 + +1.8
32,381 + +0.6
32,381 + +0.3
32,381 + +0.1
32,381 + +0.6
32,382 - +0.4
32,417 + -0.8
32,418 - -0.2
32,492 + -0.4
32,502 - +0.8
32,711 - Rru_B0033 0.32 -0.1
32,711 - Rru_B0033 0.32 -1.1
32,764 + Rru_B0033 0.40 +0.3
32,819 + Rru_B0033 0.48 +0.9
32,819 + Rru_B0033 0.48 +0.8
32,820 - Rru_B0033 0.48 -0.9
32,820 - Rru_B0033 0.48 +3.1
32,828 + Rru_B0033 0.49 +1.6
32,828 + Rru_B0033 0.49 +0.6
32,828 + Rru_B0033 0.49 +0.4
32,829 - Rru_B0033 0.49 -0.4
32,830 + Rru_B0033 0.49 +0.1
32,831 - Rru_B0033 0.49 +0.1
32,831 - Rru_B0033 0.49 -0.2
32,831 - Rru_B0033 0.49 +0.4
32,831 - Rru_B0033 0.49 +0.4
32,831 - Rru_B0033 0.49 +0.2
32,851 + Rru_B0033 0.52 +0.2
32,851 + Rru_B0033 0.52 -1.0
32,851 + Rru_B0033 0.52 -0.2
32,852 - Rru_B0033 0.52 +2.2
32,852 - Rru_B0033 0.52 -0.4
32,867 + Rru_B0033 0.55 -0.5
32,867 + Rru_B0033 0.55 -0.3
32,868 - Rru_B0033 0.55 +0.5
32,868 - Rru_B0033 0.55 -0.9
32,869 + Rru_B0033 0.55 +0.6
32,869 + Rru_B0033 0.55 +0.6
32,869 + Rru_B0033 0.55 -0.3
32,869 + Rru_B0033 0.55 -0.7
32,869 + Rru_B0033 0.55 +0.1
32,870 - Rru_B0033 0.55 +0.4
32,870 - Rru_B0033 0.55 +0.9
32,870 - Rru_B0033 0.55 +0.2
32,870 - Rru_B0033 0.55 +0.5
32,881 + Rru_B0033 0.56 +0.6
32,881 + Rru_B0033 0.56 +1.4
32,881 + Rru_B0033 0.56 +0.2
32,881 + Rru_B0033 0.56 -0.6
32,881 + Rru_B0033 0.56 +0.1
32,881 + Rru_B0033 0.56 -0.6
32,882 - Rru_B0033 0.57 +0.8
32,929 + Rru_B0033 0.63 -0.7
32,929 + Rru_B0033 0.63 +1.4
32,929 + Rru_B0033 0.63 +1.0
32,930 - Rru_B0033 0.63 -0.0
32,930 - Rru_B0033 0.63 +0.0
32,930 - Rru_B0033 0.63 +0.9
32,930 - Rru_B0033 0.63 -0.6
32,930 - Rru_B0033 0.63 -0.3
33,028 + Rru_B0033 0.77 +1.0
33,029 - Rru_B0033 0.77 +0.3
33,029 - Rru_B0033 0.77 -0.3
33,029 - Rru_B0033 0.77 +0.6
33,029 - Rru_B0033 0.77 +1.4
33,029 - Rru_B0033 0.77 +0.6
33,201 - +0.2
33,247 + -1.2
33,248 - -0.2
33,271 + +2.4
33,273 + +0.2
33,275 + -0.1
33,275 + -1.6
33,275 + +0.4
33,276 - +0.4
33,276 - -0.1
33,276 - +0.8
33,278 + +0.7
33,285 + +0.6
33,286 - +0.3
33,287 + -0.2
33,288 - -0.9

Or see this region's nucleotide sequence