Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.978.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.976.1 and Xcc-8004.977.1 are separated by 173 nucleotidesXcc-8004.977.1 and Xcc-8004.978.1 are separated by 64 nucleotidesXcc-8004.978.1 and Xcc-8004.979.1 are separated by 95 nucleotides Xcc-8004.976.1: Xcc-8004.976.1 - FIG01209789: hypothetical protein, at 927,674 to 928,771 Xcc-8004.976.1 Xcc-8004.977.1: Xcc-8004.977.1 - hypothetical protein, at 928,945 to 929,451 Xcc-8004.977.1 Xcc-8004.978.1: Xcc-8004.978.1 - C4-dicarboxylate transporter/malic acid transport protein, at 929,516 to 930,697 Xcc-8004.978.1 Xcc-8004.979.1: Xcc-8004.979.1 - LysR family transcriptional regulator YeiE, at 930,793 to 931,707 Xcc-8004.979.1 Position (kb) 929 930 931Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 928.556 kb on + strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.659 kb on - strand, within Xcc-8004.976.1at 928.659 kb on - strand, within Xcc-8004.976.1at 928.790 kb on + strandat 928.790 kb on + strandat 928.814 kb on - strandat 928.814 kb on - strandat 928.814 kb on - strandat 928.928 kb on + strandat 928.929 kb on - strandat 928.929 kb on - strandat 929.101 kb on - strand, within Xcc-8004.977.1at 929.166 kb on + strand, within Xcc-8004.977.1at 929.166 kb on + strand, within Xcc-8004.977.1at 929.166 kb on + strand, within Xcc-8004.977.1at 929.167 kb on - strand, within Xcc-8004.977.1at 929.167 kb on - strand, within Xcc-8004.977.1at 929.167 kb on - strand, within Xcc-8004.977.1at 929.177 kb on + strand, within Xcc-8004.977.1at 929.178 kb on - strand, within Xcc-8004.977.1at 929.512 kb on + strandat 929.512 kb on + strandat 929.512 kb on + strandat 929.513 kb on - strandat 929.627 kb on + strandat 929.643 kb on - strand, within Xcc-8004.978.1at 929.643 kb on - strand, within Xcc-8004.978.1at 929.643 kb on - strand, within Xcc-8004.978.1at 929.655 kb on - strand, within Xcc-8004.978.1at 929.773 kb on - strand, within Xcc-8004.978.1at 929.921 kb on + strand, within Xcc-8004.978.1at 929.921 kb on + strand, within Xcc-8004.978.1at 929.922 kb on - strand, within Xcc-8004.978.1at 930.060 kb on + strand, within Xcc-8004.978.1at 930.177 kb on - strand, within Xcc-8004.978.1at 930.183 kb on - strand, within Xcc-8004.978.1at 930.183 kb on - strand, within Xcc-8004.978.1at 930.220 kb on + strand, within Xcc-8004.978.1at 930.232 kb on - strand, within Xcc-8004.978.1at 930.330 kb on + strand, within Xcc-8004.978.1at 930.331 kb on - strand, within Xcc-8004.978.1at 930.331 kb on - strand, within Xcc-8004.978.1at 930.373 kb on + strand, within Xcc-8004.978.1at 930.373 kb on + strand, within Xcc-8004.978.1at 930.453 kb on + strand, within Xcc-8004.978.1at 930.453 kb on + strand, within Xcc-8004.978.1at 930.454 kb on - strand, within Xcc-8004.978.1at 930.454 kb on - strand, within Xcc-8004.978.1at 930.454 kb on - strand, within Xcc-8004.978.1at 930.454 kb on - strand, within Xcc-8004.978.1at 930.728 kb on + strandat 930.728 kb on + strandat 930.729 kb on - strandat 930.729 kb on - strandat 930.760 kb on + strandat 930.772 kb on + strandat 930.926 kb on + strand, within Xcc-8004.979.1at 930.926 kb on + strand, within Xcc-8004.979.1at 930.927 kb on - strand, within Xcc-8004.979.1at 930.927 kb on - strand, within Xcc-8004.979.1at 931.108 kb on + strand, within Xcc-8004.979.1at 931.108 kb on + strand, within Xcc-8004.979.1at 931.109 kb on - strand, within Xcc-8004.979.1at 931.109 kb on - strand, within Xcc-8004.979.1at 931.140 kb on + strand, within Xcc-8004.979.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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928,556 + Xcc-8004.976.1 0.80 -0.6
928,557 - Xcc-8004.976.1 0.80 -1.4
928,557 - Xcc-8004.976.1 0.80 -0.3
928,557 - Xcc-8004.976.1 0.80 +0.4
928,557 - Xcc-8004.976.1 0.80 +0.0
928,562 + Xcc-8004.976.1 0.81 +0.2
928,562 + Xcc-8004.976.1 0.81 -0.6
928,562 + Xcc-8004.976.1 0.81 -0.1
928,563 - Xcc-8004.976.1 0.81 -0.7
928,563 - Xcc-8004.976.1 0.81 -0.5
928,563 - Xcc-8004.976.1 0.81 +0.9
928,563 - Xcc-8004.976.1 0.81 +0.2
928,563 - Xcc-8004.976.1 0.81 +0.9
928,563 - Xcc-8004.976.1 0.81 -0.4
928,658 + Xcc-8004.976.1 0.90 -0.4
928,658 + Xcc-8004.976.1 0.90 -2.6
928,658 + Xcc-8004.976.1 0.90 +0.0
928,658 + Xcc-8004.976.1 0.90 +0.3
928,659 - Xcc-8004.976.1 0.90 +0.1
928,659 - Xcc-8004.976.1 0.90 +0.7
928,790 + +0.7
928,790 + -0.4
928,814 - +0.1
928,814 - -0.6
928,814 - -1.4
928,928 + +0.0
928,929 - -0.1
928,929 - +0.7
929,101 - Xcc-8004.977.1 0.31 +1.7
929,166 + Xcc-8004.977.1 0.44 -0.4
929,166 + Xcc-8004.977.1 0.44 +3.7
929,166 + Xcc-8004.977.1 0.44 +1.0
929,167 - Xcc-8004.977.1 0.44 -1.3
929,167 - Xcc-8004.977.1 0.44 +0.3
929,167 - Xcc-8004.977.1 0.44 -1.1
929,177 + Xcc-8004.977.1 0.46 +0.8
929,178 - Xcc-8004.977.1 0.46 -0.2
929,512 + +1.6
929,512 + +0.3
929,512 + +0.5
929,513 - -1.7
929,627 + -1.4
929,643 - Xcc-8004.978.1 0.11 +0.9
929,643 - Xcc-8004.978.1 0.11 -0.4
929,643 - Xcc-8004.978.1 0.11 -0.3
929,655 - Xcc-8004.978.1 0.12 +0.6
929,773 - Xcc-8004.978.1 0.22 +2.0
929,921 + Xcc-8004.978.1 0.34 +0.0
929,921 + Xcc-8004.978.1 0.34 -0.2
929,922 - Xcc-8004.978.1 0.34 -1.1
930,060 + Xcc-8004.978.1 0.46 -0.0
930,177 - Xcc-8004.978.1 0.56 -0.1
930,183 - Xcc-8004.978.1 0.56 +0.5
930,183 - Xcc-8004.978.1 0.56 +0.6
930,220 + Xcc-8004.978.1 0.60 -1.7
930,232 - Xcc-8004.978.1 0.61 -0.5
930,330 + Xcc-8004.978.1 0.69 +1.3
930,331 - Xcc-8004.978.1 0.69 -0.8
930,331 - Xcc-8004.978.1 0.69 +0.7
930,373 + Xcc-8004.978.1 0.73 -0.2
930,373 + Xcc-8004.978.1 0.73 +0.7
930,453 + Xcc-8004.978.1 0.79 +2.5
930,453 + Xcc-8004.978.1 0.79 +1.8
930,454 - Xcc-8004.978.1 0.79 -0.6
930,454 - Xcc-8004.978.1 0.79 -3.3
930,454 - Xcc-8004.978.1 0.79 -0.9
930,454 - Xcc-8004.978.1 0.79 -0.4
930,728 + +1.8
930,728 + +2.5
930,729 - +0.8
930,729 - +0.8
930,760 + +0.6
930,772 + -0.6
930,926 + Xcc-8004.979.1 0.15 -1.3
930,926 + Xcc-8004.979.1 0.15 +1.0
930,927 - Xcc-8004.979.1 0.15 +1.1
930,927 - Xcc-8004.979.1 0.15 +2.1
931,108 + Xcc-8004.979.1 0.34 -0.0
931,108 + Xcc-8004.979.1 0.34 +0.5
931,109 - Xcc-8004.979.1 0.35 +0.5
931,109 - Xcc-8004.979.1 0.35 +1.9
931,140 + Xcc-8004.979.1 0.38 -0.3

Or see this region's nucleotide sequence