Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.853.1 and Xcc-8004.854.1 are separated by 218 nucleotides Xcc-8004.854.1 and Xcc-8004.855.1 overlap by 4 nucleotides Xcc-8004.855.1 and Xcc-8004.856.1 are separated by 34 nucleotides
Xcc-8004.853.1: Xcc-8004.853.1 - putative; ORF located using Glimmer/Genemark, at 803,415 to 803,714
Xcc-8004.853.1
Xcc-8004.854.1: Xcc-8004.854.1 - Cytosine deaminase (EC 3.5.4.1), at 803,933 to 804,388
Xcc-8004.854.1
Xcc-8004.855.1: Xcc-8004.855.1 - ElaA protein, at 804,385 to 804,876
Xcc-8004.855.1
Xcc-8004.856.1: Xcc-8004.856.1 - multidrug resistance efflux pump, at 804,911 to 806,002
Xcc-8004.856.1
Position (kb) 804
805 Strain fitness (log2 ratio) -2
-1
0
1 at 803.435 kb on - strand at 803.435 kb on - strand at 803.839 kb on - strand at 803.873 kb on + strand at 803.981 kb on - strand, within Xcc-8004.854.1 at 803.983 kb on - strand, within Xcc-8004.854.1 at 804.289 kb on - strand, within Xcc-8004.854.1 at 804.432 kb on + strand at 804.433 kb on - strand at 804.455 kb on + strand, within Xcc-8004.855.1 at 804.491 kb on + strand, within Xcc-8004.855.1 at 804.492 kb on - strand, within Xcc-8004.855.1 at 804.647 kb on + strand, within Xcc-8004.855.1 at 804.648 kb on - strand, within Xcc-8004.855.1 at 804.678 kb on - strand, within Xcc-8004.855.1 at 804.813 kb on - strand, within Xcc-8004.855.1 at 805.257 kb on + strand, within Xcc-8004.856.1 at 805.257 kb on + strand, within Xcc-8004.856.1 at 805.258 kb on - strand, within Xcc-8004.856.1 at 805.258 kb on - strand, within Xcc-8004.856.1 at 805.258 kb on - strand, within Xcc-8004.856.1 at 805.258 kb on - strand, within Xcc-8004.856.1 at 805.258 kb on - strand, within Xcc-8004.856.1 at 805.704 kb on + strand, within Xcc-8004.856.1 at 805.705 kb on - strand, within Xcc-8004.856.1 at 805.705 kb on - strand, within Xcc-8004.856.1 at 805.705 kb on - strand, within Xcc-8004.856.1 at 805.705 kb on - strand, within Xcc-8004.856.1 at 805.705 kb on - strand, within Xcc-8004.856.1 at 805.782 kb on + strand, within Xcc-8004.856.1 at 805.782 kb on + strand, within Xcc-8004.856.1 at 805.782 kb on + strand, within Xcc-8004.856.1 at 805.782 kb on + strand, within Xcc-8004.856.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 803,435 - -2.0 803,435 - +0.1 803,839 - -0.4 803,873 + -1.1 803,981 - Xcc-8004.854.1 0.11 +0.0 803,983 - Xcc-8004.854.1 0.11 +0.3 804,289 - Xcc-8004.854.1 0.78 +0.7 804,432 + -2.4 804,433 - +0.2 804,455 + Xcc-8004.855.1 0.14 -0.3 804,491 + Xcc-8004.855.1 0.22 -0.3 804,492 - Xcc-8004.855.1 0.22 -0.1 804,647 + Xcc-8004.855.1 0.53 -0.8 804,648 - Xcc-8004.855.1 0.53 +0.7 804,678 - Xcc-8004.855.1 0.60 -0.4 804,813 - Xcc-8004.855.1 0.87 -2.1 805,257 + Xcc-8004.856.1 0.32 +0.2 805,257 + Xcc-8004.856.1 0.32 +0.1 805,258 - Xcc-8004.856.1 0.32 +1.4 805,258 - Xcc-8004.856.1 0.32 +0.6 805,258 - Xcc-8004.856.1 0.32 -1.8 805,258 - Xcc-8004.856.1 0.32 -0.1 805,258 - Xcc-8004.856.1 0.32 -0.5 805,704 + Xcc-8004.856.1 0.73 -1.6 805,705 - Xcc-8004.856.1 0.73 -0.9 805,705 - Xcc-8004.856.1 0.73 -1.5 805,705 - Xcc-8004.856.1 0.73 -0.4 805,705 - Xcc-8004.856.1 0.73 -0.5 805,705 - Xcc-8004.856.1 0.73 -0.8 805,782 + Xcc-8004.856.1 0.80 +0.8 805,782 + Xcc-8004.856.1 0.80 +0.3 805,782 + Xcc-8004.856.1 0.80 +1.4 805,782 + Xcc-8004.856.1 0.80 -1.7
Or see this region's nucleotide sequence