Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.678.1 and Xcc-8004.679.1 are separated by 42 nucleotides Xcc-8004.679.1 and Xcc-8004.680.1 are separated by 17 nucleotides Xcc-8004.680.1 and Xcc-8004.681.1 are separated by 79 nucleotides
Xcc-8004.678.1: Xcc-8004.678.1 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 623,239 to 624,606
Xcc-8004.678.1
Xcc-8004.679.1: Xcc-8004.679.1 - 23Sr RNA gene, at 624,649 to 625,035
Xcc-8004.679.1
Xcc-8004.680.1: Xcc-8004.680.1 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 625,053 to 625,535
Xcc-8004.680.1
Xcc-8004.681.1: Xcc-8004.681.1 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 625,615 to 626,061
Xcc-8004.681.1
Position (kb) 625
626 Strain fitness (log2 ratio) -1
0
1
2 at 624.638 kb on - strand at 624.818 kb on - strand, within Xcc-8004.679.1 at 624.818 kb on - strand, within Xcc-8004.679.1 at 624.831 kb on - strand, within Xcc-8004.679.1 at 624.954 kb on - strand, within Xcc-8004.679.1 at 624.954 kb on - strand, within Xcc-8004.679.1 at 625.716 kb on - strand, within Xcc-8004.681.1 at 626.298 kb on + strand at 626.298 kb on + strand at 626.298 kb on + strand at 626.299 kb on - strand at 626.299 kb on - strand at 626.299 kb on - strand at 626.299 kb on - strand at 626.373 kb on + strand at 626.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 624,638 - +2.6 624,818 - Xcc-8004.679.1 0.44 +0.5 624,818 - Xcc-8004.679.1 0.44 -1.2 624,831 - Xcc-8004.679.1 0.47 +0.6 624,954 - Xcc-8004.679.1 0.79 +2.2 624,954 - Xcc-8004.679.1 0.79 +2.7 625,716 - Xcc-8004.681.1 0.23 -1.0 626,298 + +0.6 626,298 + +1.9 626,298 + -1.6 626,299 - +0.7 626,299 - -0.4 626,299 - +0.0 626,299 - +0.1 626,373 + -1.6 626,423 + +0.1
Or see this region's nucleotide sequence