Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5301.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.5300.1 and Xcc-8004.5301.1 are separated by 59 nucleotidesXcc-8004.5301.1 and Xcc-8004.5302.1 are separated by 354 nucleotides Xcc-8004.5300.1: Xcc-8004.5300.1 - FIG007317: Chromosome segregation protein SMC-like, at 5,039,145 to 5,043,161 Xcc-8004.5300.1 Xcc-8004.5301.1: Xcc-8004.5301.1 - hypothetical protein, at 5,043,221 to 5,043,934 Xcc-8004.5301.1 Xcc-8004.5302.1: Xcc-8004.5302.1 - FIG039767: hypothetical protein, at 5,044,289 to 5,044,996 Xcc-8004.5302.1 Position (kb) 5043 5044Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 5042.224 kb on + strand, within Xcc-8004.5300.1at 5042.225 kb on - strand, within Xcc-8004.5300.1at 5042.662 kb on + strand, within Xcc-8004.5300.1at 5042.662 kb on + strand, within Xcc-8004.5300.1at 5042.662 kb on + strand, within Xcc-8004.5300.1at 5042.662 kb on + strand, within Xcc-8004.5300.1at 5042.662 kb on + strand, within Xcc-8004.5300.1at 5042.662 kb on + strand, within Xcc-8004.5300.1at 5042.662 kb on + strand, within Xcc-8004.5300.1at 5042.663 kb on - strand, within Xcc-8004.5300.1at 5042.663 kb on - strand, within Xcc-8004.5300.1at 5042.663 kb on - strand, within Xcc-8004.5300.1at 5042.663 kb on - strand, within Xcc-8004.5300.1at 5042.663 kb on - strand, within Xcc-8004.5300.1at 5042.663 kb on - strand, within Xcc-8004.5300.1at 5042.663 kb on - strand, within Xcc-8004.5300.1at 5042.761 kb on - strandat 5042.761 kb on - strandat 5042.794 kb on + strandat 5042.794 kb on + strandat 5042.794 kb on + strandat 5042.794 kb on + strandat 5042.795 kb on - strandat 5042.795 kb on - strandat 5042.854 kb on + strandat 5042.854 kb on + strandat 5042.854 kb on + strandat 5042.854 kb on + strandat 5042.854 kb on + strandat 5042.855 kb on - strandat 5042.855 kb on - strandat 5042.855 kb on - strandat 5042.855 kb on - strandat 5042.855 kb on - strandat 5043.054 kb on + strandat 5043.055 kb on - strandat 5043.055 kb on - strandat 5043.055 kb on - strandat 5043.072 kb on - strandat 5043.072 kb on - strandat 5043.210 kb on + strandat 5043.210 kb on + strandat 5043.211 kb on - strandat 5043.344 kb on + strand, within Xcc-8004.5301.1at 5043.344 kb on + strand, within Xcc-8004.5301.1at 5043.361 kb on + strand, within Xcc-8004.5301.1at 5043.487 kb on - strand, within Xcc-8004.5301.1at 5043.489 kb on + strand, within Xcc-8004.5301.1at 5043.489 kb on + strand, within Xcc-8004.5301.1at 5043.489 kb on + strand, within Xcc-8004.5301.1at 5043.490 kb on - strand, within Xcc-8004.5301.1at 5043.490 kb on - strand, within Xcc-8004.5301.1at 5043.510 kb on + strand, within Xcc-8004.5301.1at 5043.510 kb on + strand, within Xcc-8004.5301.1at 5043.511 kb on - strand, within Xcc-8004.5301.1at 5043.630 kb on + strand, within Xcc-8004.5301.1at 5043.630 kb on + strand, within Xcc-8004.5301.1at 5043.700 kb on + strand, within Xcc-8004.5301.1at 5043.727 kb on - strand, within Xcc-8004.5301.1at 5043.751 kb on - strand, within Xcc-8004.5301.1at 5043.751 kb on - strand, within Xcc-8004.5301.1at 5044.032 kb on - strandat 5044.218 kb on + strandat 5044.392 kb on + strand, within Xcc-8004.5302.1at 5044.392 kb on + strand, within Xcc-8004.5302.1at 5044.471 kb on + strand, within Xcc-8004.5302.1at 5044.471 kb on + strand, within Xcc-8004.5302.1at 5044.507 kb on - strand, within Xcc-8004.5302.1at 5044.507 kb on - strand, within Xcc-8004.5302.1at 5044.507 kb on - strand, within Xcc-8004.5302.1at 5044.709 kb on + strand, within Xcc-8004.5302.1at 5044.709 kb on + strand, within Xcc-8004.5302.1at 5044.764 kb on - strand, within Xcc-8004.5302.1at 5044.859 kb on - strand, within Xcc-8004.5302.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
remove
5,042,224 + Xcc-8004.5300.1 0.77 -0.8
5,042,225 - Xcc-8004.5300.1 0.77 +0.4
5,042,662 + Xcc-8004.5300.1 0.88 -1.0
5,042,662 + Xcc-8004.5300.1 0.88 +0.6
5,042,662 + Xcc-8004.5300.1 0.88 -0.6
5,042,662 + Xcc-8004.5300.1 0.88 -2.4
5,042,662 + Xcc-8004.5300.1 0.88 +0.5
5,042,662 + Xcc-8004.5300.1 0.88 -1.3
5,042,662 + Xcc-8004.5300.1 0.88 -0.9
5,042,663 - Xcc-8004.5300.1 0.88 +0.8
5,042,663 - Xcc-8004.5300.1 0.88 +0.3
5,042,663 - Xcc-8004.5300.1 0.88 +0.9
5,042,663 - Xcc-8004.5300.1 0.88 -1.6
5,042,663 - Xcc-8004.5300.1 0.88 +1.2
5,042,663 - Xcc-8004.5300.1 0.88 +0.1
5,042,663 - Xcc-8004.5300.1 0.88 +1.7
5,042,761 - -2.4
5,042,761 - +5.0
5,042,794 + -0.2
5,042,794 + +1.5
5,042,794 + -0.5
5,042,794 + -1.4
5,042,795 - +0.1
5,042,795 - +1.8
5,042,854 + -0.5
5,042,854 + +0.3
5,042,854 + +0.8
5,042,854 + -0.8
5,042,854 + +0.2
5,042,855 - -1.6
5,042,855 - +1.3
5,042,855 - -0.1
5,042,855 - +0.3
5,042,855 - -1.3
5,043,054 + -1.2
5,043,055 - +0.2
5,043,055 - +1.8
5,043,055 - -2.6
5,043,072 - +0.4
5,043,072 - +0.3
5,043,210 + +0.9
5,043,210 + +0.3
5,043,211 - +0.3
5,043,344 + Xcc-8004.5301.1 0.17 -0.7
5,043,344 + Xcc-8004.5301.1 0.17 -1.5
5,043,361 + Xcc-8004.5301.1 0.20 -0.2
5,043,487 - Xcc-8004.5301.1 0.37 -1.5
5,043,489 + Xcc-8004.5301.1 0.38 -1.3
5,043,489 + Xcc-8004.5301.1 0.38 +0.9
5,043,489 + Xcc-8004.5301.1 0.38 -2.2
5,043,490 - Xcc-8004.5301.1 0.38 -0.2
5,043,490 - Xcc-8004.5301.1 0.38 -0.6
5,043,510 + Xcc-8004.5301.1 0.40 +0.5
5,043,510 + Xcc-8004.5301.1 0.40 +0.3
5,043,511 - Xcc-8004.5301.1 0.41 +1.4
5,043,630 + Xcc-8004.5301.1 0.57 +0.1
5,043,630 + Xcc-8004.5301.1 0.57 -0.2
5,043,700 + Xcc-8004.5301.1 0.67 -0.1
5,043,727 - Xcc-8004.5301.1 0.71 -0.8
5,043,751 - Xcc-8004.5301.1 0.74 -0.5
5,043,751 - Xcc-8004.5301.1 0.74 +0.9
5,044,032 - +0.6
5,044,218 + +1.3
5,044,392 + Xcc-8004.5302.1 0.15 -0.4
5,044,392 + Xcc-8004.5302.1 0.15 -0.4
5,044,471 + Xcc-8004.5302.1 0.26 +1.1
5,044,471 + Xcc-8004.5302.1 0.26 -1.2
5,044,507 - Xcc-8004.5302.1 0.31 -0.9
5,044,507 - Xcc-8004.5302.1 0.31 -0.6
5,044,507 - Xcc-8004.5302.1 0.31 +1.1
5,044,709 + Xcc-8004.5302.1 0.59 -2.1
5,044,709 + Xcc-8004.5302.1 0.59 -0.2
5,044,764 - Xcc-8004.5302.1 0.67 +1.6
5,044,859 - Xcc-8004.5302.1 0.81 -0.2

Or see this region's nucleotide sequence