Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.517.1 and Xcc-8004.518.1 are separated by 581 nucleotides Xcc-8004.518.1 and Xcc-8004.519.1 are separated by 25 nucleotides Xcc-8004.519.1 and Xcc-8004.522.1 overlap by 23 nucleotides
Xcc-8004.517.1: Xcc-8004.517.1 - hypothetical protein, at 471,893 to 472,324
Xcc-8004.517.1
Xcc-8004.518.1: Xcc-8004.518.1 - hypothetical protein, at 472,906 to 473,097
Xcc-8004.518.1
Xcc-8004.519.1: Xcc-8004.519.1 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 473,123 to 475,726
Xcc-8004.519.1
Xcc-8004.522.1: Xcc-8004.522.1 - Mobile element protein, at 475,704 to 477,200
Xcc-8004.522.1
Position (kb) 473
474
475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 472.150 kb on - strand, within Xcc-8004.517.1 at 472.225 kb on + strand, within Xcc-8004.517.1 at 472.250 kb on + strand, within Xcc-8004.517.1 at 472.250 kb on + strand, within Xcc-8004.517.1 at 472.251 kb on - strand, within Xcc-8004.517.1 at 472.251 kb on - strand, within Xcc-8004.517.1 at 472.251 kb on - strand, within Xcc-8004.517.1 at 472.251 kb on - strand, within Xcc-8004.517.1 at 472.301 kb on + strand at 472.301 kb on + strand at 472.302 kb on - strand at 472.302 kb on - strand at 472.392 kb on + strand at 472.521 kb on - strand at 472.523 kb on + strand at 472.524 kb on - strand at 472.595 kb on + strand at 472.595 kb on + strand at 472.595 kb on + strand at 472.595 kb on + strand at 472.595 kb on + strand at 472.596 kb on - strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.635 kb on + strand at 472.635 kb on + strand at 472.635 kb on + strand at 472.635 kb on + strand at 472.636 kb on - strand at 472.655 kb on + strand at 472.656 kb on - strand at 472.661 kb on + strand at 472.661 kb on + strand at 472.662 kb on - strand at 472.737 kb on + strand at 472.737 kb on + strand at 472.738 kb on - strand at 472.738 kb on - strand at 472.792 kb on + strand at 472.792 kb on + strand at 472.792 kb on + strand at 472.952 kb on + strand, within Xcc-8004.518.1 at 472.969 kb on - strand, within Xcc-8004.518.1 at 472.972 kb on + strand, within Xcc-8004.518.1 at 473.020 kb on + strand, within Xcc-8004.518.1 at 473.020 kb on + strand, within Xcc-8004.518.1 at 473.021 kb on - strand, within Xcc-8004.518.1 at 473.021 kb on - strand, within Xcc-8004.518.1 at 473.050 kb on + strand, within Xcc-8004.518.1 at 473.050 kb on + strand, within Xcc-8004.518.1 at 473.050 kb on + strand, within Xcc-8004.518.1 at 473.050 kb on + strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.072 kb on + strand, within Xcc-8004.518.1 at 473.072 kb on + strand, within Xcc-8004.518.1 at 473.073 kb on - strand, within Xcc-8004.518.1 at 473.131 kb on + strand at 473.132 kb on - strand at 473.229 kb on + strand at 473.230 kb on - strand at 473.238 kb on - strand at 473.251 kb on + strand at 473.251 kb on + strand at 473.251 kb on + strand at 473.252 kb on - strand at 473.252 kb on - strand at 473.252 kb on - strand at 473.314 kb on + strand at 473.314 kb on + strand at 473.315 kb on - strand at 473.423 kb on + strand, within Xcc-8004.519.1 at 473.424 kb on - strand, within Xcc-8004.519.1 at 473.442 kb on + strand, within Xcc-8004.519.1 at 473.621 kb on + strand, within Xcc-8004.519.1 at 473.621 kb on + strand, within Xcc-8004.519.1 at 473.622 kb on - strand, within Xcc-8004.519.1 at 473.622 kb on - strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.705 kb on - strand, within Xcc-8004.519.1 at 473.894 kb on + strand, within Xcc-8004.519.1 at 473.894 kb on + strand, within Xcc-8004.519.1 at 473.894 kb on + strand, within Xcc-8004.519.1 at 473.895 kb on - strand, within Xcc-8004.519.1 at 473.895 kb on - strand, within Xcc-8004.519.1 at 473.895 kb on - strand, within Xcc-8004.519.1 at 473.895 kb on - strand, within Xcc-8004.519.1 at 474.011 kb on + strand, within Xcc-8004.519.1 at 474.012 kb on - strand, within Xcc-8004.519.1 at 474.019 kb on - strand, within Xcc-8004.519.1 at 474.019 kb on - strand, within Xcc-8004.519.1 at 474.019 kb on - strand, within Xcc-8004.519.1 at 474.050 kb on + strand, within Xcc-8004.519.1 at 474.050 kb on + strand, within Xcc-8004.519.1 at 474.092 kb on + strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.126 kb on + strand, within Xcc-8004.519.1 at 474.126 kb on + strand, within Xcc-8004.519.1 at 474.126 kb on + strand, within Xcc-8004.519.1 at 474.126 kb on + strand, within Xcc-8004.519.1 at 474.127 kb on - strand, within Xcc-8004.519.1 at 474.127 kb on - strand, within Xcc-8004.519.1 at 474.127 kb on - strand, within Xcc-8004.519.1 at 474.127 kb on - strand, within Xcc-8004.519.1 at 474.137 kb on + strand, within Xcc-8004.519.1 at 474.138 kb on - strand, within Xcc-8004.519.1 at 474.238 kb on - strand, within Xcc-8004.519.1 at 474.248 kb on + strand, within Xcc-8004.519.1 at 474.275 kb on + strand, within Xcc-8004.519.1 at 474.326 kb on + strand, within Xcc-8004.519.1 at 474.438 kb on - strand, within Xcc-8004.519.1 at 474.476 kb on + strand, within Xcc-8004.519.1 at 474.477 kb on - strand, within Xcc-8004.519.1 at 474.477 kb on - strand, within Xcc-8004.519.1 at 474.477 kb on - strand, within Xcc-8004.519.1 at 474.605 kb on + strand, within Xcc-8004.519.1 at 474.605 kb on + strand, within Xcc-8004.519.1 at 474.606 kb on - strand, within Xcc-8004.519.1 at 474.606 kb on - strand, within Xcc-8004.519.1 at 474.606 kb on - strand, within Xcc-8004.519.1 at 474.671 kb on + strand, within Xcc-8004.519.1 at 474.689 kb on - strand, within Xcc-8004.519.1 at 474.689 kb on - strand, within Xcc-8004.519.1 at 474.752 kb on + strand, within Xcc-8004.519.1 at 474.753 kb on - strand, within Xcc-8004.519.1 at 474.808 kb on + strand, within Xcc-8004.519.1 at 474.809 kb on - strand, within Xcc-8004.519.1 at 474.971 kb on + strand, within Xcc-8004.519.1 at 474.972 kb on - strand, within Xcc-8004.519.1 at 474.972 kb on - strand, within Xcc-8004.519.1 at 475.037 kb on + strand, within Xcc-8004.519.1 at 475.037 kb on + strand, within Xcc-8004.519.1 at 475.134 kb on - strand, within Xcc-8004.519.1 at 475.187 kb on + strand, within Xcc-8004.519.1 at 475.188 kb on - strand, within Xcc-8004.519.1 at 475.188 kb on - strand, within Xcc-8004.519.1 at 475.331 kb on + strand, within Xcc-8004.519.1 at 475.331 kb on + strand, within Xcc-8004.519.1 at 475.331 kb on + strand, within Xcc-8004.519.1 at 475.332 kb on - strand, within Xcc-8004.519.1 at 475.479 kb on - strand at 475.479 kb on - strand at 475.670 kb on + strand at 475.670 kb on + strand at 475.670 kb on + strand at 475.670 kb on + strand at 475.671 kb on - strand at 475.671 kb on - strand at 475.671 kb on - strand at 475.673 kb on - strand at 475.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 472,150 - Xcc-8004.517.1 0.59 +0.8 472,225 + Xcc-8004.517.1 0.77 -1.5 472,250 + Xcc-8004.517.1 0.83 -0.5 472,250 + Xcc-8004.517.1 0.83 -0.8 472,251 - Xcc-8004.517.1 0.83 -0.5 472,251 - Xcc-8004.517.1 0.83 +0.9 472,251 - Xcc-8004.517.1 0.83 -1.2 472,251 - Xcc-8004.517.1 0.83 -0.5 472,301 + -0.7 472,301 + -2.7 472,302 - -2.4 472,302 - -0.3 472,392 + -1.7 472,521 - +0.5 472,523 + +0.6 472,524 - -0.4 472,595 + +0.2 472,595 + -1.0 472,595 + +0.9 472,595 + +0.6 472,595 + -0.6 472,596 - -1.1 472,628 + +0.8 472,628 + -0.1 472,628 + -0.5 472,628 + +0.7 472,628 + -1.9 472,628 + +0.3 472,628 + -1.1 472,628 + -1.8 472,628 + +1.4 472,628 + +1.7 472,628 + -0.6 472,628 + -1.1 472,629 - -0.8 472,629 - +0.2 472,629 - -0.2 472,629 - -2.3 472,629 - -0.1 472,629 - -1.2 472,629 - +0.7 472,629 - +1.7 472,629 - +0.3 472,635 + -1.2 472,635 + -1.0 472,635 + -0.4 472,635 + -0.9 472,636 - -2.0 472,655 + +0.0 472,656 - +1.7 472,661 + -0.5 472,661 + +1.7 472,662 - -0.7 472,737 + -0.4 472,737 + -0.3 472,738 - -0.8 472,738 - +1.1 472,792 + -0.6 472,792 + -0.9 472,792 + +0.4 472,952 + Xcc-8004.518.1 0.24 +0.1 472,969 - Xcc-8004.518.1 0.33 +1.7 472,972 + Xcc-8004.518.1 0.34 -0.4 473,020 + Xcc-8004.518.1 0.59 +0.3 473,020 + Xcc-8004.518.1 0.59 +0.8 473,021 - Xcc-8004.518.1 0.60 -0.9 473,021 - Xcc-8004.518.1 0.60 -2.0 473,050 + Xcc-8004.518.1 0.75 +1.4 473,050 + Xcc-8004.518.1 0.75 -1.0 473,050 + Xcc-8004.518.1 0.75 +0.7 473,050 + Xcc-8004.518.1 0.75 -0.2 473,051 - Xcc-8004.518.1 0.76 +0.1 473,051 - Xcc-8004.518.1 0.76 -1.5 473,051 - Xcc-8004.518.1 0.76 -0.8 473,051 - Xcc-8004.518.1 0.76 -1.3 473,051 - Xcc-8004.518.1 0.76 -0.7 473,051 - Xcc-8004.518.1 0.76 +0.6 473,072 + Xcc-8004.518.1 0.86 -2.0 473,072 + Xcc-8004.518.1 0.86 +0.1 473,073 - Xcc-8004.518.1 0.87 -2.2 473,131 + -2.4 473,132 - -1.0 473,229 + -2.1 473,230 - +0.2 473,238 - +0.4 473,251 + -1.0 473,251 + +0.9 473,251 + +0.1 473,252 - -0.6 473,252 - +0.4 473,252 - -0.8 473,314 + +0.2 473,314 + +2.9 473,315 - -0.3 473,423 + Xcc-8004.519.1 0.12 -1.3 473,424 - Xcc-8004.519.1 0.12 +2.0 473,442 + Xcc-8004.519.1 0.12 -3.0 473,621 + Xcc-8004.519.1 0.19 -0.4 473,621 + Xcc-8004.519.1 0.19 -0.1 473,622 - Xcc-8004.519.1 0.19 +0.3 473,622 - Xcc-8004.519.1 0.19 +0.7 473,696 + Xcc-8004.519.1 0.22 +0.6 473,696 + Xcc-8004.519.1 0.22 -3.0 473,696 + Xcc-8004.519.1 0.22 -0.5 473,696 + Xcc-8004.519.1 0.22 -1.7 473,696 + Xcc-8004.519.1 0.22 -0.0 473,696 + Xcc-8004.519.1 0.22 -0.5 473,696 + Xcc-8004.519.1 0.22 -1.7 473,696 + Xcc-8004.519.1 0.22 -1.0 473,696 + Xcc-8004.519.1 0.22 +1.3 473,697 - Xcc-8004.519.1 0.22 +0.2 473,697 - Xcc-8004.519.1 0.22 -0.3 473,697 - Xcc-8004.519.1 0.22 +0.6 473,697 - Xcc-8004.519.1 0.22 +0.7 473,697 - Xcc-8004.519.1 0.22 -2.5 473,697 - Xcc-8004.519.1 0.22 -0.1 473,705 - Xcc-8004.519.1 0.22 -0.6 473,894 + Xcc-8004.519.1 0.30 +0.7 473,894 + Xcc-8004.519.1 0.30 -1.6 473,894 + Xcc-8004.519.1 0.30 -1.0 473,895 - Xcc-8004.519.1 0.30 -0.5 473,895 - Xcc-8004.519.1 0.30 -0.9 473,895 - Xcc-8004.519.1 0.30 -0.1 473,895 - Xcc-8004.519.1 0.30 +1.2 474,011 + Xcc-8004.519.1 0.34 +1.7 474,012 - Xcc-8004.519.1 0.34 +0.2 474,019 - Xcc-8004.519.1 0.34 -1.7 474,019 - Xcc-8004.519.1 0.34 -1.9 474,019 - Xcc-8004.519.1 0.34 -3.0 474,050 + Xcc-8004.519.1 0.36 +0.3 474,050 + Xcc-8004.519.1 0.36 -0.0 474,092 + Xcc-8004.519.1 0.37 -0.1 474,093 - Xcc-8004.519.1 0.37 -1.1 474,093 - Xcc-8004.519.1 0.37 +2.1 474,093 - Xcc-8004.519.1 0.37 +0.2 474,093 - Xcc-8004.519.1 0.37 -2.0 474,093 - Xcc-8004.519.1 0.37 +2.1 474,093 - Xcc-8004.519.1 0.37 +2.6 474,093 - Xcc-8004.519.1 0.37 +4.1 474,093 - Xcc-8004.519.1 0.37 +0.8 474,093 - Xcc-8004.519.1 0.37 -1.9 474,126 + Xcc-8004.519.1 0.39 +1.2 474,126 + Xcc-8004.519.1 0.39 -1.0 474,126 + Xcc-8004.519.1 0.39 -1.1 474,126 + Xcc-8004.519.1 0.39 +0.2 474,127 - Xcc-8004.519.1 0.39 -1.2 474,127 - Xcc-8004.519.1 0.39 -1.4 474,127 - Xcc-8004.519.1 0.39 +0.1 474,127 - Xcc-8004.519.1 0.39 -1.4 474,137 + Xcc-8004.519.1 0.39 +1.0 474,138 - Xcc-8004.519.1 0.39 -0.6 474,238 - Xcc-8004.519.1 0.43 +1.6 474,248 + Xcc-8004.519.1 0.43 -1.3 474,275 + Xcc-8004.519.1 0.44 +1.8 474,326 + Xcc-8004.519.1 0.46 -1.2 474,438 - Xcc-8004.519.1 0.50 -0.5 474,476 + Xcc-8004.519.1 0.52 -0.6 474,477 - Xcc-8004.519.1 0.52 -1.6 474,477 - Xcc-8004.519.1 0.52 -1.8 474,477 - Xcc-8004.519.1 0.52 +0.9 474,605 + Xcc-8004.519.1 0.57 +0.7 474,605 + Xcc-8004.519.1 0.57 -1.2 474,606 - Xcc-8004.519.1 0.57 +0.4 474,606 - Xcc-8004.519.1 0.57 -1.8 474,606 - Xcc-8004.519.1 0.57 +1.1 474,671 + Xcc-8004.519.1 0.59 +0.3 474,689 - Xcc-8004.519.1 0.60 +1.4 474,689 - Xcc-8004.519.1 0.60 -2.8 474,752 + Xcc-8004.519.1 0.63 -1.2 474,753 - Xcc-8004.519.1 0.63 +0.9 474,808 + Xcc-8004.519.1 0.65 +0.6 474,809 - Xcc-8004.519.1 0.65 +1.1 474,971 + Xcc-8004.519.1 0.71 +1.1 474,972 - Xcc-8004.519.1 0.71 -1.3 474,972 - Xcc-8004.519.1 0.71 -0.7 475,037 + Xcc-8004.519.1 0.74 -0.2 475,037 + Xcc-8004.519.1 0.74 -0.6 475,134 - Xcc-8004.519.1 0.77 -1.0 475,187 + Xcc-8004.519.1 0.79 -1.6 475,188 - Xcc-8004.519.1 0.79 +3.1 475,188 - Xcc-8004.519.1 0.79 -1.6 475,331 + Xcc-8004.519.1 0.85 -2.3 475,331 + Xcc-8004.519.1 0.85 -1.0 475,331 + Xcc-8004.519.1 0.85 +0.2 475,332 - Xcc-8004.519.1 0.85 -0.1 475,479 - +0.3 475,479 - -2.6 475,670 + -0.6 475,670 + -0.7 475,670 + -2.0 475,670 + +0.1 475,671 - -0.1 475,671 - +3.5 475,671 - -0.9 475,673 - +1.0 475,715 - +0.4
Or see this region's nucleotide sequence