Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.483.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.481.1 and Xcc-8004.482.1 are separated by 27 nucleotidesXcc-8004.482.1 and Xcc-8004.483.1 are separated by 485 nucleotidesXcc-8004.483.1 and Xcc-8004.484.1 are separated by 15 nucleotides Xcc-8004.481.1: Xcc-8004.481.1 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 444,035 to 444,817 Xcc-8004.481.1 Xcc-8004.482.1: Xcc-8004.482.1 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 444,845 to 445,249 Xcc-8004.482.1 Xcc-8004.483.1: Xcc-8004.483.1 - Hydrolase, at 445,735 to 446,661 Xcc-8004.483.1 Xcc-8004.484.1: Xcc-8004.484.1 - Pca regulon regulatory protein PcaR, at 446,677 to 447,537 Xcc-8004.484.1 Position (kb) 445 446 447Strain fitness (log2 ratio) -2 -1 0 1 2 3at 445.134 kb on + strand, within Xcc-8004.482.1at 445.134 kb on + strand, within Xcc-8004.482.1at 445.134 kb on + strand, within Xcc-8004.482.1at 445.134 kb on + strand, within Xcc-8004.482.1at 445.154 kb on + strand, within Xcc-8004.482.1at 445.155 kb on - strand, within Xcc-8004.482.1at 445.155 kb on - strand, within Xcc-8004.482.1at 445.300 kb on - strandat 445.497 kb on + strandat 445.686 kb on + strandat 445.687 kb on - strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.776 kb on + strandat 445.776 kb on + strandat 445.776 kb on + strandat 445.776 kb on + strandat 445.777 kb on - strandat 445.777 kb on - strandat 446.017 kb on + strand, within Xcc-8004.483.1at 446.017 kb on + strand, within Xcc-8004.483.1at 446.017 kb on + strand, within Xcc-8004.483.1at 446.018 kb on - strand, within Xcc-8004.483.1at 446.164 kb on + strand, within Xcc-8004.483.1at 446.165 kb on - strand, within Xcc-8004.483.1at 446.236 kb on + strand, within Xcc-8004.483.1at 446.237 kb on - strand, within Xcc-8004.483.1at 446.237 kb on - strand, within Xcc-8004.483.1at 446.237 kb on - strand, within Xcc-8004.483.1at 446.237 kb on - strand, within Xcc-8004.483.1at 446.366 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.377 kb on + strand, within Xcc-8004.483.1at 446.378 kb on - strand, within Xcc-8004.483.1at 446.378 kb on - strand, within Xcc-8004.483.1at 446.378 kb on - strand, within Xcc-8004.483.1at 446.378 kb on - strand, within Xcc-8004.483.1at 446.966 kb on + strand, within Xcc-8004.484.1at 446.966 kb on + strand, within Xcc-8004.484.1at 446.967 kb on - strand, within Xcc-8004.484.1at 446.967 kb on - strand, within Xcc-8004.484.1at 446.967 kb on - strand, within Xcc-8004.484.1at 447.095 kb on + strand, within Xcc-8004.484.1at 447.095 kb on + strand, within Xcc-8004.484.1at 447.095 kb on + strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.096 kb on - strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.206 kb on + strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.207 kb on - strand, within Xcc-8004.484.1at 447.245 kb on + strand, within Xcc-8004.484.1at 447.246 kb on - strand, within Xcc-8004.484.1at 447.269 kb on + strand, within Xcc-8004.484.1at 447.269 kb on + strand, within Xcc-8004.484.1at 447.269 kb on + strand, within Xcc-8004.484.1at 447.269 kb on + strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.270 kb on - strand, within Xcc-8004.484.1at 447.569 kb on + strandat 447.569 kb on + strandat 447.570 kb on - strandat 447.648 kb on - strandat 447.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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445,134 + Xcc-8004.482.1 0.71 -1.6
445,134 + Xcc-8004.482.1 0.71 -0.2
445,134 + Xcc-8004.482.1 0.71 -1.0
445,134 + Xcc-8004.482.1 0.71 +1.7
445,154 + Xcc-8004.482.1 0.76 -0.9
445,155 - Xcc-8004.482.1 0.77 -1.0
445,155 - Xcc-8004.482.1 0.77 +0.4
445,300 - -1.0
445,497 + -0.7
445,686 + -0.3
445,687 - -1.8
445,742 + -1.1
445,742 + +0.1
445,742 + -0.2
445,742 + -1.1
445,742 + -0.5
445,743 - +0.2
445,743 - +2.0
445,743 - -0.0
445,743 - +1.1
445,743 - +1.6
445,743 - +0.7
445,743 - +1.9
445,776 + +0.7
445,776 + -0.8
445,776 + +0.0
445,776 + +0.5
445,777 - -0.6
445,777 - -0.0
446,017 + Xcc-8004.483.1 0.30 -0.1
446,017 + Xcc-8004.483.1 0.30 -0.7
446,017 + Xcc-8004.483.1 0.30 +0.4
446,018 - Xcc-8004.483.1 0.31 +1.4
446,164 + Xcc-8004.483.1 0.46 +0.8
446,165 - Xcc-8004.483.1 0.46 +0.6
446,236 + Xcc-8004.483.1 0.54 -1.4
446,237 - Xcc-8004.483.1 0.54 +0.7
446,237 - Xcc-8004.483.1 0.54 -2.0
446,237 - Xcc-8004.483.1 0.54 +1.7
446,237 - Xcc-8004.483.1 0.54 -0.2
446,366 + Xcc-8004.483.1 0.68 +0.8
446,377 + Xcc-8004.483.1 0.69 +0.4
446,377 + Xcc-8004.483.1 0.69 +0.2
446,377 + Xcc-8004.483.1 0.69 +0.2
446,377 + Xcc-8004.483.1 0.69 -0.5
446,377 + Xcc-8004.483.1 0.69 +1.5
446,377 + Xcc-8004.483.1 0.69 -1.0
446,378 - Xcc-8004.483.1 0.69 -0.7
446,378 - Xcc-8004.483.1 0.69 +2.3
446,378 - Xcc-8004.483.1 0.69 -0.7
446,378 - Xcc-8004.483.1 0.69 +1.1
446,966 + Xcc-8004.484.1 0.34 -0.1
446,966 + Xcc-8004.484.1 0.34 +1.3
446,967 - Xcc-8004.484.1 0.34 +1.6
446,967 - Xcc-8004.484.1 0.34 +1.4
446,967 - Xcc-8004.484.1 0.34 -0.4
447,095 + Xcc-8004.484.1 0.49 +1.1
447,095 + Xcc-8004.484.1 0.49 +1.5
447,095 + Xcc-8004.484.1 0.49 -0.2
447,096 - Xcc-8004.484.1 0.49 -1.8
447,096 - Xcc-8004.484.1 0.49 -1.1
447,096 - Xcc-8004.484.1 0.49 +0.2
447,096 - Xcc-8004.484.1 0.49 -0.1
447,096 - Xcc-8004.484.1 0.49 -1.5
447,096 - Xcc-8004.484.1 0.49 +1.4
447,206 + Xcc-8004.484.1 0.61 -0.0
447,206 + Xcc-8004.484.1 0.61 +0.9
447,206 + Xcc-8004.484.1 0.61 +0.4
447,206 + Xcc-8004.484.1 0.61 -0.7
447,206 + Xcc-8004.484.1 0.61 +1.0
447,207 - Xcc-8004.484.1 0.62 +0.9
447,207 - Xcc-8004.484.1 0.62 +1.0
447,207 - Xcc-8004.484.1 0.62 -1.1
447,207 - Xcc-8004.484.1 0.62 -0.4
447,207 - Xcc-8004.484.1 0.62 +1.4
447,245 + Xcc-8004.484.1 0.66 +0.7
447,246 - Xcc-8004.484.1 0.66 +0.7
447,269 + Xcc-8004.484.1 0.69 -1.1
447,269 + Xcc-8004.484.1 0.69 +0.6
447,269 + Xcc-8004.484.1 0.69 -1.7
447,269 + Xcc-8004.484.1 0.69 +0.4
447,270 - Xcc-8004.484.1 0.69 +1.0
447,270 - Xcc-8004.484.1 0.69 -1.0
447,270 - Xcc-8004.484.1 0.69 -0.7
447,270 - Xcc-8004.484.1 0.69 +0.7
447,270 - Xcc-8004.484.1 0.69 -0.8
447,270 - Xcc-8004.484.1 0.69 -0.1
447,270 - Xcc-8004.484.1 0.69 +0.4
447,569 + -0.2
447,569 + +3.0
447,570 - +0.9
447,648 - -0.6
447,648 - +0.3

Or see this region's nucleotide sequence