Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4524.1 and Xcc-8004.4525.1 are separated by 212 nucleotides Xcc-8004.4525.1 and Xcc-8004.4526.1 are separated by 43 nucleotides Xcc-8004.4526.1 and Xcc-8004.4527.1 are separated by 379 nucleotides
Xcc-8004.4524.1: Xcc-8004.4524.1 - hypothetical protein, at 4,323,369 to 4,323,506
Xcc-8004.4524.1
Xcc-8004.4525.1: Xcc-8004.4525.1 - Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18), at 4,323,719 to 4,324,393
Xcc-8004.4525.1
Xcc-8004.4526.1: Xcc-8004.4526.1 - Fumarylacetoacetate hydrolase family protein, at 4,324,437 to 4,325,426
Xcc-8004.4526.1
Xcc-8004.4527.1: Xcc-8004.4527.1 - ATP-dependent RNA helicase RhlE, at 4,325,806 to 4,327,194
Xcc-8004.4527.1
Position (kb) 4324
4325
4326 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4323.448 kb on + strand, within Xcc-8004.4524.1 at 4323.448 kb on + strand, within Xcc-8004.4524.1 at 4323.448 kb on + strand, within Xcc-8004.4524.1 at 4323.448 kb on + strand, within Xcc-8004.4524.1 at 4323.448 kb on + strand, within Xcc-8004.4524.1 at 4323.448 kb on + strand, within Xcc-8004.4524.1 at 4323.449 kb on - strand, within Xcc-8004.4524.1 at 4323.449 kb on - strand, within Xcc-8004.4524.1 at 4323.449 kb on - strand, within Xcc-8004.4524.1 at 4323.449 kb on - strand, within Xcc-8004.4524.1 at 4323.449 kb on - strand, within Xcc-8004.4524.1 at 4323.449 kb on - strand, within Xcc-8004.4524.1 at 4323.452 kb on + strand, within Xcc-8004.4524.1 at 4323.452 kb on + strand, within Xcc-8004.4524.1 at 4323.453 kb on - strand, within Xcc-8004.4524.1 at 4323.453 kb on - strand, within Xcc-8004.4524.1 at 4323.453 kb on - strand, within Xcc-8004.4524.1 at 4323.453 kb on - strand, within Xcc-8004.4524.1 at 4323.533 kb on + strand at 4323.533 kb on + strand at 4323.533 kb on + strand at 4323.534 kb on - strand at 4323.534 kb on - strand at 4323.534 kb on - strand at 4323.534 kb on - strand at 4323.615 kb on + strand at 4323.616 kb on - strand at 4323.616 kb on - strand at 4323.720 kb on + strand at 4323.721 kb on - strand at 4323.721 kb on - strand at 4323.810 kb on + strand, within Xcc-8004.4525.1 at 4323.811 kb on - strand, within Xcc-8004.4525.1 at 4323.846 kb on + strand, within Xcc-8004.4525.1 at 4323.846 kb on + strand, within Xcc-8004.4525.1 at 4323.847 kb on - strand, within Xcc-8004.4525.1 at 4323.847 kb on - strand, within Xcc-8004.4525.1 at 4323.847 kb on - strand, within Xcc-8004.4525.1 at 4324.164 kb on + strand, within Xcc-8004.4525.1 at 4324.165 kb on - strand, within Xcc-8004.4525.1 at 4324.165 kb on - strand, within Xcc-8004.4525.1 at 4324.165 kb on - strand, within Xcc-8004.4525.1 at 4324.248 kb on + strand, within Xcc-8004.4525.1 at 4324.248 kb on + strand, within Xcc-8004.4525.1 at 4324.249 kb on - strand, within Xcc-8004.4525.1 at 4324.305 kb on + strand, within Xcc-8004.4525.1 at 4324.306 kb on - strand, within Xcc-8004.4525.1 at 4324.338 kb on - strand at 4324.345 kb on - strand at 4324.366 kb on - strand at 4324.521 kb on + strand at 4324.521 kb on + strand at 4324.521 kb on + strand at 4324.521 kb on + strand at 4324.521 kb on + strand at 4324.522 kb on - strand at 4324.522 kb on - strand at 4324.522 kb on - strand at 4324.522 kb on - strand at 4324.522 kb on - strand at 4324.522 kb on - strand at 4324.522 kb on - strand at 4324.940 kb on + strand, within Xcc-8004.4526.1 at 4324.940 kb on + strand, within Xcc-8004.4526.1 at 4324.940 kb on + strand, within Xcc-8004.4526.1 at 4324.940 kb on + strand, within Xcc-8004.4526.1 at 4324.940 kb on + strand, within Xcc-8004.4526.1 at 4324.941 kb on - strand, within Xcc-8004.4526.1 at 4324.941 kb on - strand, within Xcc-8004.4526.1 at 4325.062 kb on + strand, within Xcc-8004.4526.1 at 4325.062 kb on + strand, within Xcc-8004.4526.1 at 4325.062 kb on + strand, within Xcc-8004.4526.1 at 4325.062 kb on + strand, within Xcc-8004.4526.1 at 4325.063 kb on - strand, within Xcc-8004.4526.1 at 4325.063 kb on - strand, within Xcc-8004.4526.1 at 4325.063 kb on - strand, within Xcc-8004.4526.1 at 4325.086 kb on + strand, within Xcc-8004.4526.1 at 4325.086 kb on + strand, within Xcc-8004.4526.1 at 4325.086 kb on + strand, within Xcc-8004.4526.1 at 4325.086 kb on + strand, within Xcc-8004.4526.1 at 4325.086 kb on + strand, within Xcc-8004.4526.1 at 4325.086 kb on + strand, within Xcc-8004.4526.1 at 4325.086 kb on + strand, within Xcc-8004.4526.1 at 4325.086 kb on + strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.087 kb on - strand, within Xcc-8004.4526.1 at 4325.104 kb on + strand, within Xcc-8004.4526.1 at 4325.104 kb on + strand, within Xcc-8004.4526.1 at 4325.104 kb on + strand, within Xcc-8004.4526.1 at 4325.104 kb on + strand, within Xcc-8004.4526.1 at 4325.104 kb on + strand, within Xcc-8004.4526.1 at 4325.104 kb on + strand, within Xcc-8004.4526.1 at 4325.105 kb on - strand, within Xcc-8004.4526.1 at 4325.105 kb on - strand, within Xcc-8004.4526.1 at 4325.105 kb on - strand, within Xcc-8004.4526.1 at 4325.164 kb on + strand, within Xcc-8004.4526.1 at 4325.165 kb on - strand, within Xcc-8004.4526.1 at 4325.165 kb on - strand, within Xcc-8004.4526.1 at 4325.165 kb on - strand, within Xcc-8004.4526.1 at 4325.189 kb on - strand, within Xcc-8004.4526.1 at 4325.418 kb on + strand at 4325.418 kb on + strand at 4325.418 kb on + strand at 4325.418 kb on + strand at 4325.418 kb on + strand at 4325.418 kb on + strand at 4325.418 kb on + strand at 4325.418 kb on + strand at 4325.418 kb on + strand at 4325.419 kb on - strand at 4325.419 kb on - strand at 4325.419 kb on - strand at 4325.419 kb on - strand at 4325.419 kb on - strand at 4325.419 kb on - strand at 4325.419 kb on - strand at 4325.419 kb on - strand at 4325.419 kb on - strand at 4325.419 kb on - strand at 4325.461 kb on + strand at 4325.461 kb on + strand at 4325.461 kb on + strand at 4325.462 kb on - strand at 4325.462 kb on - strand at 4325.462 kb on - strand at 4325.462 kb on - strand at 4325.462 kb on - strand at 4325.462 kb on - strand at 4325.462 kb on - strand at 4325.462 kb on - strand at 4325.553 kb on + strand at 4325.553 kb on + strand at 4325.553 kb on + strand at 4325.554 kb on - strand at 4325.790 kb on + strand at 4325.790 kb on + strand at 4325.790 kb on + strand at 4325.791 kb on - strand at 4325.791 kb on - strand at 4325.791 kb on - strand at 4325.791 kb on - strand at 4325.791 kb on - strand at 4325.866 kb on + strand at 4325.867 kb on - strand at 4325.867 kb on - strand at 4326.097 kb on + strand, within Xcc-8004.4527.1 at 4326.097 kb on + strand, within Xcc-8004.4527.1 at 4326.097 kb on + strand, within Xcc-8004.4527.1 at 4326.098 kb on - strand, within Xcc-8004.4527.1 at 4326.106 kb on + strand, within Xcc-8004.4527.1 at 4326.106 kb on + strand, within Xcc-8004.4527.1 at 4326.106 kb on + strand, within Xcc-8004.4527.1 at 4326.106 kb on + strand, within Xcc-8004.4527.1 at 4326.106 kb on + strand, within Xcc-8004.4527.1 at 4326.107 kb on - strand, within Xcc-8004.4527.1 at 4326.107 kb on - strand, within Xcc-8004.4527.1 at 4326.107 kb on - strand, within Xcc-8004.4527.1 at 4326.133 kb on + strand, within Xcc-8004.4527.1 at 4326.133 kb on + strand, within Xcc-8004.4527.1 at 4326.133 kb on + strand, within Xcc-8004.4527.1 at 4326.133 kb on + strand, within Xcc-8004.4527.1 at 4326.133 kb on + strand, within Xcc-8004.4527.1 at 4326.134 kb on - strand, within Xcc-8004.4527.1 at 4326.134 kb on - strand, within Xcc-8004.4527.1 at 4326.134 kb on - strand, within Xcc-8004.4527.1 at 4326.182 kb on + strand, within Xcc-8004.4527.1 at 4326.182 kb on + strand, within Xcc-8004.4527.1 at 4326.182 kb on + strand, within Xcc-8004.4527.1 at 4326.183 kb on - strand, within Xcc-8004.4527.1 at 4326.183 kb on - strand, within Xcc-8004.4527.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 4,323,448 + Xcc-8004.4524.1 0.57 +0.1 4,323,448 + Xcc-8004.4524.1 0.57 -0.8 4,323,448 + Xcc-8004.4524.1 0.57 -0.8 4,323,448 + Xcc-8004.4524.1 0.57 -0.9 4,323,448 + Xcc-8004.4524.1 0.57 -0.7 4,323,448 + Xcc-8004.4524.1 0.57 +1.2 4,323,449 - Xcc-8004.4524.1 0.58 +1.2 4,323,449 - Xcc-8004.4524.1 0.58 -1.2 4,323,449 - Xcc-8004.4524.1 0.58 +0.9 4,323,449 - Xcc-8004.4524.1 0.58 -0.1 4,323,449 - Xcc-8004.4524.1 0.58 -0.9 4,323,449 - Xcc-8004.4524.1 0.58 -0.7 4,323,452 + Xcc-8004.4524.1 0.60 -1.8 4,323,452 + Xcc-8004.4524.1 0.60 -0.0 4,323,453 - Xcc-8004.4524.1 0.61 +1.1 4,323,453 - Xcc-8004.4524.1 0.61 -0.3 4,323,453 - Xcc-8004.4524.1 0.61 +0.5 4,323,453 - Xcc-8004.4524.1 0.61 -0.5 4,323,533 + +0.5 4,323,533 + -1.2 4,323,533 + -0.2 4,323,534 - -0.8 4,323,534 - -2.0 4,323,534 - -2.6 4,323,534 - -0.4 4,323,615 + -1.8 4,323,616 - +0.3 4,323,616 - +1.3 4,323,720 + +0.6 4,323,721 - -1.7 4,323,721 - -1.5 4,323,810 + Xcc-8004.4525.1 0.13 +0.7 4,323,811 - Xcc-8004.4525.1 0.14 -0.3 4,323,846 + Xcc-8004.4525.1 0.19 +0.3 4,323,846 + Xcc-8004.4525.1 0.19 +0.8 4,323,847 - Xcc-8004.4525.1 0.19 -1.0 4,323,847 - Xcc-8004.4525.1 0.19 -1.6 4,323,847 - Xcc-8004.4525.1 0.19 -1.4 4,324,164 + Xcc-8004.4525.1 0.66 -1.0 4,324,165 - Xcc-8004.4525.1 0.66 -0.3 4,324,165 - Xcc-8004.4525.1 0.66 +0.9 4,324,165 - Xcc-8004.4525.1 0.66 -1.1 4,324,248 + Xcc-8004.4525.1 0.78 -1.0 4,324,248 + Xcc-8004.4525.1 0.78 -0.7 4,324,249 - Xcc-8004.4525.1 0.79 -1.0 4,324,305 + Xcc-8004.4525.1 0.87 +1.8 4,324,306 - Xcc-8004.4525.1 0.87 -0.4 4,324,338 - +1.6 4,324,345 - -1.5 4,324,366 - +0.8 4,324,521 + -0.1 4,324,521 + -2.9 4,324,521 + -0.8 4,324,521 + -0.1 4,324,521 + +1.3 4,324,522 - +1.7 4,324,522 - -2.3 4,324,522 - -2.5 4,324,522 - -2.6 4,324,522 - -1.2 4,324,522 - -1.2 4,324,522 - -0.8 4,324,940 + Xcc-8004.4526.1 0.51 -1.0 4,324,940 + Xcc-8004.4526.1 0.51 -2.4 4,324,940 + Xcc-8004.4526.1 0.51 +1.0 4,324,940 + Xcc-8004.4526.1 0.51 -2.3 4,324,940 + Xcc-8004.4526.1 0.51 -1.0 4,324,941 - Xcc-8004.4526.1 0.51 -0.1 4,324,941 - Xcc-8004.4526.1 0.51 -1.6 4,325,062 + Xcc-8004.4526.1 0.63 -2.3 4,325,062 + Xcc-8004.4526.1 0.63 +0.6 4,325,062 + Xcc-8004.4526.1 0.63 -1.7 4,325,062 + Xcc-8004.4526.1 0.63 -0.7 4,325,063 - Xcc-8004.4526.1 0.63 -2.3 4,325,063 - Xcc-8004.4526.1 0.63 -1.9 4,325,063 - Xcc-8004.4526.1 0.63 -0.6 4,325,086 + Xcc-8004.4526.1 0.66 +0.8 4,325,086 + Xcc-8004.4526.1 0.66 +1.4 4,325,086 + Xcc-8004.4526.1 0.66 -0.3 4,325,086 + Xcc-8004.4526.1 0.66 -2.5 4,325,086 + Xcc-8004.4526.1 0.66 -1.6 4,325,086 + Xcc-8004.4526.1 0.66 -0.9 4,325,086 + Xcc-8004.4526.1 0.66 -0.5 4,325,086 + Xcc-8004.4526.1 0.66 +0.4 4,325,087 - Xcc-8004.4526.1 0.66 -1.7 4,325,087 - Xcc-8004.4526.1 0.66 -0.9 4,325,087 - Xcc-8004.4526.1 0.66 +1.7 4,325,087 - Xcc-8004.4526.1 0.66 +0.3 4,325,087 - Xcc-8004.4526.1 0.66 -1.7 4,325,087 - Xcc-8004.4526.1 0.66 -2.3 4,325,087 - Xcc-8004.4526.1 0.66 -2.2 4,325,087 - Xcc-8004.4526.1 0.66 -0.6 4,325,087 - Xcc-8004.4526.1 0.66 -2.8 4,325,087 - Xcc-8004.4526.1 0.66 -2.4 4,325,087 - Xcc-8004.4526.1 0.66 +1.0 4,325,087 - Xcc-8004.4526.1 0.66 -2.8 4,325,087 - Xcc-8004.4526.1 0.66 +0.4 4,325,087 - Xcc-8004.4526.1 0.66 -1.3 4,325,087 - Xcc-8004.4526.1 0.66 +0.4 4,325,104 + Xcc-8004.4526.1 0.67 -1.0 4,325,104 + Xcc-8004.4526.1 0.67 +1.3 4,325,104 + Xcc-8004.4526.1 0.67 -2.2 4,325,104 + Xcc-8004.4526.1 0.67 -1.5 4,325,104 + Xcc-8004.4526.1 0.67 -2.1 4,325,104 + Xcc-8004.4526.1 0.67 +0.2 4,325,105 - Xcc-8004.4526.1 0.67 -1.0 4,325,105 - Xcc-8004.4526.1 0.67 -2.6 4,325,105 - Xcc-8004.4526.1 0.67 +0.7 4,325,164 + Xcc-8004.4526.1 0.73 -2.0 4,325,165 - Xcc-8004.4526.1 0.74 -0.6 4,325,165 - Xcc-8004.4526.1 0.74 -1.1 4,325,165 - Xcc-8004.4526.1 0.74 -2.3 4,325,189 - Xcc-8004.4526.1 0.76 -1.5 4,325,418 + -1.2 4,325,418 + -2.8 4,325,418 + -0.9 4,325,418 + -0.7 4,325,418 + +2.4 4,325,418 + -0.6 4,325,418 + -2.4 4,325,418 + +0.8 4,325,418 + -1.1 4,325,419 - -2.0 4,325,419 - -0.3 4,325,419 - -2.2 4,325,419 - +0.2 4,325,419 - -0.3 4,325,419 - -1.0 4,325,419 - -0.3 4,325,419 - +0.0 4,325,419 - -1.6 4,325,419 - +1.3 4,325,461 + -0.3 4,325,461 + +1.5 4,325,461 + +0.7 4,325,462 - -0.7 4,325,462 - -0.0 4,325,462 - +0.9 4,325,462 - +1.6 4,325,462 - +1.7 4,325,462 - -2.6 4,325,462 - -0.2 4,325,462 - -0.2 4,325,553 + +0.3 4,325,553 + -0.9 4,325,553 + +1.1 4,325,554 - -0.8 4,325,790 + +0.1 4,325,790 + +1.4 4,325,790 + +1.8 4,325,791 - -0.6 4,325,791 - -0.2 4,325,791 - -2.1 4,325,791 - +0.1 4,325,791 - -0.2 4,325,866 + -0.4 4,325,867 - +1.9 4,325,867 - -2.6 4,326,097 + Xcc-8004.4527.1 0.21 -1.9 4,326,097 + Xcc-8004.4527.1 0.21 -1.8 4,326,097 + Xcc-8004.4527.1 0.21 -1.5 4,326,098 - Xcc-8004.4527.1 0.21 -0.3 4,326,106 + Xcc-8004.4527.1 0.22 -0.8 4,326,106 + Xcc-8004.4527.1 0.22 +0.7 4,326,106 + Xcc-8004.4527.1 0.22 +0.2 4,326,106 + Xcc-8004.4527.1 0.22 -0.2 4,326,106 + Xcc-8004.4527.1 0.22 -1.9 4,326,107 - Xcc-8004.4527.1 0.22 +0.3 4,326,107 - Xcc-8004.4527.1 0.22 -0.5 4,326,107 - Xcc-8004.4527.1 0.22 +0.2 4,326,133 + Xcc-8004.4527.1 0.24 -0.5 4,326,133 + Xcc-8004.4527.1 0.24 -0.3 4,326,133 + Xcc-8004.4527.1 0.24 +2.7 4,326,133 + Xcc-8004.4527.1 0.24 -0.6 4,326,133 + Xcc-8004.4527.1 0.24 +2.1 4,326,134 - Xcc-8004.4527.1 0.24 -1.0 4,326,134 - Xcc-8004.4527.1 0.24 -0.4 4,326,134 - Xcc-8004.4527.1 0.24 -0.9 4,326,182 + Xcc-8004.4527.1 0.27 -1.9 4,326,182 + Xcc-8004.4527.1 0.27 +0.4 4,326,182 + Xcc-8004.4527.1 0.27 -0.4 4,326,183 - Xcc-8004.4527.1 0.27 -3.3 4,326,183 - Xcc-8004.4527.1 0.27 -0.1
Or see this region's nucleotide sequence