Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.287.1 and Xcc-8004.288.1 are separated by 126 nucleotides Xcc-8004.288.1 and Xcc-8004.289.1 are separated by 291 nucleotides Xcc-8004.289.1 and Xcc-8004.290.1 are separated by 96 nucleotides
Xcc-8004.287.1: Xcc-8004.287.1 - Haloalkane dehalogenase-like protein, at 274,298 to 275,200
Xcc-8004.287.1
Xcc-8004.288.1: Xcc-8004.288.1 - Ferredoxin, at 275,327 to 275,755
Xcc-8004.288.1
Xcc-8004.289.1: Xcc-8004.289.1 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 276,047 to 277,717
Xcc-8004.289.1
Xcc-8004.290.1: Xcc-8004.290.1 - NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster, at 277,814 to 278,824
Xcc-8004.290.1
Position (kb) 276
277
278 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 275.129 kb on + strand at 275.129 kb on + strand at 275.198 kb on + strand at 275.198 kb on + strand at 275.335 kb on + strand at 275.336 kb on - strand at 275.336 kb on - strand at 275.692 kb on + strand, within Xcc-8004.288.1 at 275.692 kb on + strand, within Xcc-8004.288.1 at 275.693 kb on - strand, within Xcc-8004.288.1 at 275.778 kb on - strand at 275.892 kb on + strand at 275.914 kb on + strand at 276.039 kb on - strand at 276.082 kb on + strand at 276.500 kb on + strand, within Xcc-8004.289.1 at 277.237 kb on + strand, within Xcc-8004.289.1 at 277.431 kb on + strand, within Xcc-8004.289.1 at 277.715 kb on + strand at 277.715 kb on + strand at 277.715 kb on + strand at 277.715 kb on + strand at 277.716 kb on - strand at 277.716 kb on - strand at 277.716 kb on - strand at 277.716 kb on - strand at 278.058 kb on - strand, within Xcc-8004.290.1 at 278.058 kb on - strand, within Xcc-8004.290.1 at 278.132 kb on + strand, within Xcc-8004.290.1 at 278.132 kb on + strand, within Xcc-8004.290.1 at 278.133 kb on - strand, within Xcc-8004.290.1 at 278.133 kb on - strand, within Xcc-8004.290.1 at 278.420 kb on + strand, within Xcc-8004.290.1 at 278.420 kb on + strand, within Xcc-8004.290.1 at 278.420 kb on + strand, within Xcc-8004.290.1 at 278.421 kb on - strand, within Xcc-8004.290.1 at 278.421 kb on - strand, within Xcc-8004.290.1 at 278.499 kb on - strand, within Xcc-8004.290.1 at 278.538 kb on + strand, within Xcc-8004.290.1 at 278.694 kb on + strand, within Xcc-8004.290.1 at 278.694 kb on + strand, within Xcc-8004.290.1 at 278.695 kb on - strand, within Xcc-8004.290.1 at 278.695 kb on - strand, within Xcc-8004.290.1 at 278.711 kb on + strand, within Xcc-8004.290.1 at 278.712 kb on - strand, within Xcc-8004.290.1 at 278.712 kb on - strand, within Xcc-8004.290.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 275,129 + -0.4 275,129 + +0.2 275,198 + -1.1 275,198 + -0.6 275,335 + -1.6 275,336 - -0.1 275,336 - +0.5 275,692 + Xcc-8004.288.1 0.85 +3.8 275,692 + Xcc-8004.288.1 0.85 +2.7 275,693 - Xcc-8004.288.1 0.85 -2.1 275,778 - +0.9 275,892 + -1.0 275,914 + +0.7 276,039 - +0.1 276,082 + +0.7 276,500 + Xcc-8004.289.1 0.27 -0.7 277,237 + Xcc-8004.289.1 0.71 -1.7 277,431 + Xcc-8004.289.1 0.83 -0.1 277,715 + +2.0 277,715 + +0.3 277,715 + -2.7 277,715 + +0.1 277,716 - +1.0 277,716 - -0.9 277,716 - +0.7 277,716 - -0.8 278,058 - Xcc-8004.290.1 0.24 -0.0 278,058 - Xcc-8004.290.1 0.24 +1.7 278,132 + Xcc-8004.290.1 0.31 +0.7 278,132 + Xcc-8004.290.1 0.31 -0.3 278,133 - Xcc-8004.290.1 0.32 +0.1 278,133 - Xcc-8004.290.1 0.32 +0.3 278,420 + Xcc-8004.290.1 0.60 -1.0 278,420 + Xcc-8004.290.1 0.60 -0.3 278,420 + Xcc-8004.290.1 0.60 +1.3 278,421 - Xcc-8004.290.1 0.60 -0.7 278,421 - Xcc-8004.290.1 0.60 -0.3 278,499 - Xcc-8004.290.1 0.68 +0.9 278,538 + Xcc-8004.290.1 0.72 -0.7 278,694 + Xcc-8004.290.1 0.87 -0.7 278,694 + Xcc-8004.290.1 0.87 +1.7 278,695 - Xcc-8004.290.1 0.87 -0.5 278,695 - Xcc-8004.290.1 0.87 +0.9 278,711 + Xcc-8004.290.1 0.89 -0.6 278,712 - Xcc-8004.290.1 0.89 +3.8 278,712 - Xcc-8004.290.1 0.89 +0.8
Or see this region's nucleotide sequence