Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2424.1 and Xcc-8004.2425.1 are separated by 192 nucleotides Xcc-8004.2425.1 and Xcc-8004.2426.1 are separated by 104 nucleotides Xcc-8004.2426.1 and Xcc-8004.2427.1 are separated by 36 nucleotides
Xcc-8004.2424.1: Xcc-8004.2424.1 - Nucleoside-diphosphate-sugar epimerases, at 2,364,887 to 2,366,098
Xcc-8004.2424.1
Xcc-8004.2425.1: Xcc-8004.2425.1 - FIG01211745: hypothetical protein, at 2,366,291 to 2,366,518
Xcc-8004.2425.1
Xcc-8004.2426.1: Xcc-8004.2426.1 - Transcription accessory protein (S1 RNA-binding domain), at 2,366,623 to 2,368,986
Xcc-8004.2426.1
Xcc-8004.2427.1: Xcc-8004.2427.1 - Two-component system sensor protein, at 2,369,023 to 2,372,463
Xcc-8004.2427.1
Position (kb) 2366
2367
2368
2369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 2365.716 kb on + strand, within Xcc-8004.2424.1 at 2365.716 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.719 kb on + strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.720 kb on - strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.806 kb on + strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.807 kb on - strand, within Xcc-8004.2424.1 at 2365.828 kb on + strand, within Xcc-8004.2424.1 at 2365.828 kb on + strand, within Xcc-8004.2424.1 at 2365.828 kb on + strand, within Xcc-8004.2424.1 at 2365.829 kb on - strand, within Xcc-8004.2424.1 at 2365.829 kb on - strand, within Xcc-8004.2424.1 at 2365.833 kb on + strand, within Xcc-8004.2424.1 at 2365.833 kb on + strand, within Xcc-8004.2424.1 at 2365.834 kb on - strand, within Xcc-8004.2424.1 at 2365.834 kb on - strand, within Xcc-8004.2424.1 at 2366.243 kb on + strand at 2366.243 kb on + strand at 2366.243 kb on + strand at 2366.243 kb on + strand at 2366.244 kb on - strand at 2366.244 kb on - strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.290 kb on + strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.291 kb on - strand at 2366.306 kb on + strand at 2366.307 kb on - strand at 2366.307 kb on - strand at 2366.333 kb on - strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.396 kb on + strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.397 kb on - strand, within Xcc-8004.2425.1 at 2366.498 kb on + strand at 2366.499 kb on - strand at 2366.499 kb on - strand at 2366.530 kb on + strand at 2366.530 kb on + strand at 2366.530 kb on + strand at 2366.530 kb on + strand at 2366.530 kb on + strand at 2366.531 kb on - strand at 2366.531 kb on - strand at 2366.531 kb on - strand at 2366.531 kb on - strand at 2366.531 kb on - strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.536 kb on + strand at 2366.537 kb on - strand at 2366.537 kb on - strand at 2366.537 kb on - strand at 2366.537 kb on - strand at 2366.818 kb on + strand at 2366.818 kb on + strand at 2366.819 kb on - strand at 2366.819 kb on - strand at 2366.819 kb on - strand at 2366.819 kb on - strand at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.944 kb on + strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.945 kb on - strand, within Xcc-8004.2426.1 at 2366.953 kb on + strand, within Xcc-8004.2426.1 at 2366.953 kb on + strand, within Xcc-8004.2426.1 at 2366.953 kb on + strand, within Xcc-8004.2426.1 at 2366.954 kb on - strand, within Xcc-8004.2426.1 at 2366.954 kb on - strand, within Xcc-8004.2426.1 at 2367.067 kb on + strand, within Xcc-8004.2426.1 at 2367.067 kb on + strand, within Xcc-8004.2426.1 at 2367.067 kb on + strand, within Xcc-8004.2426.1 at 2367.067 kb on + strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.068 kb on - strand, within Xcc-8004.2426.1 at 2367.177 kb on + strand, within Xcc-8004.2426.1 at 2367.177 kb on + strand, within Xcc-8004.2426.1 at 2367.178 kb on - strand, within Xcc-8004.2426.1 at 2367.178 kb on - strand, within Xcc-8004.2426.1 at 2367.248 kb on - strand, within Xcc-8004.2426.1 at 2367.248 kb on - strand, within Xcc-8004.2426.1 at 2367.257 kb on - strand, within Xcc-8004.2426.1 at 2367.257 kb on - strand, within Xcc-8004.2426.1 at 2367.257 kb on - strand, within Xcc-8004.2426.1 at 2367.340 kb on + strand, within Xcc-8004.2426.1 at 2367.340 kb on + strand, within Xcc-8004.2426.1 at 2367.340 kb on + strand, within Xcc-8004.2426.1 at 2367.341 kb on - strand, within Xcc-8004.2426.1 at 2367.385 kb on + strand, within Xcc-8004.2426.1 at 2367.386 kb on - strand, within Xcc-8004.2426.1 at 2367.684 kb on - strand, within Xcc-8004.2426.1 at 2367.701 kb on - strand, within Xcc-8004.2426.1 at 2367.701 kb on - strand, within Xcc-8004.2426.1 at 2367.701 kb on - strand, within Xcc-8004.2426.1 at 2367.701 kb on - strand, within Xcc-8004.2426.1 at 2367.798 kb on + strand, within Xcc-8004.2426.1 at 2367.799 kb on - strand, within Xcc-8004.2426.1 at 2367.799 kb on - strand, within Xcc-8004.2426.1 at 2367.901 kb on + strand, within Xcc-8004.2426.1 at 2367.901 kb on + strand, within Xcc-8004.2426.1 at 2367.901 kb on + strand, within Xcc-8004.2426.1 at 2367.902 kb on - strand, within Xcc-8004.2426.1 at 2367.902 kb on - strand, within Xcc-8004.2426.1 at 2367.902 kb on - strand, within Xcc-8004.2426.1 at 2368.042 kb on + strand, within Xcc-8004.2426.1 at 2368.042 kb on + strand, within Xcc-8004.2426.1 at 2368.043 kb on - strand, within Xcc-8004.2426.1 at 2368.043 kb on - strand, within Xcc-8004.2426.1 at 2368.063 kb on + strand, within Xcc-8004.2426.1 at 2368.064 kb on - strand, within Xcc-8004.2426.1 at 2368.064 kb on - strand, within Xcc-8004.2426.1 at 2368.123 kb on + strand, within Xcc-8004.2426.1 at 2368.123 kb on + strand, within Xcc-8004.2426.1 at 2368.123 kb on + strand, within Xcc-8004.2426.1 at 2368.124 kb on - strand, within Xcc-8004.2426.1 at 2368.124 kb on - strand, within Xcc-8004.2426.1 at 2368.124 kb on - strand, within Xcc-8004.2426.1 at 2368.124 kb on - strand, within Xcc-8004.2426.1 at 2368.131 kb on + strand, within Xcc-8004.2426.1 at 2368.176 kb on + strand, within Xcc-8004.2426.1 at 2368.177 kb on - strand, within Xcc-8004.2426.1 at 2368.177 kb on - strand, within Xcc-8004.2426.1 at 2368.804 kb on - strand at 2369.045 kb on - strand at 2369.045 kb on - strand at 2369.169 kb on - strand at 2369.243 kb on + strand at 2369.244 kb on - strand at 2369.244 kb on - strand at 2369.288 kb on + strand at 2369.288 kb on + strand at 2369.288 kb on + strand at 2369.288 kb on + strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.289 kb on - strand at 2369.719 kb on + strand, within Xcc-8004.2427.1 at 2369.720 kb on - strand, within Xcc-8004.2427.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 2,365,716 + Xcc-8004.2424.1 0.68 -1.3 2,365,716 + Xcc-8004.2424.1 0.68 -1.0 2,365,719 + Xcc-8004.2424.1 0.69 +0.0 2,365,719 + Xcc-8004.2424.1 0.69 +0.1 2,365,719 + Xcc-8004.2424.1 0.69 -2.6 2,365,719 + Xcc-8004.2424.1 0.69 +0.7 2,365,719 + Xcc-8004.2424.1 0.69 -0.2 2,365,719 + Xcc-8004.2424.1 0.69 +0.3 2,365,720 - Xcc-8004.2424.1 0.69 +0.5 2,365,720 - Xcc-8004.2424.1 0.69 +0.3 2,365,720 - Xcc-8004.2424.1 0.69 -0.5 2,365,720 - Xcc-8004.2424.1 0.69 -1.3 2,365,720 - Xcc-8004.2424.1 0.69 +0.3 2,365,720 - Xcc-8004.2424.1 0.69 -0.1 2,365,720 - Xcc-8004.2424.1 0.69 -0.6 2,365,720 - Xcc-8004.2424.1 0.69 -0.6 2,365,720 - Xcc-8004.2424.1 0.69 +0.0 2,365,806 + Xcc-8004.2424.1 0.76 -0.2 2,365,806 + Xcc-8004.2424.1 0.76 -0.2 2,365,806 + Xcc-8004.2424.1 0.76 +0.3 2,365,806 + Xcc-8004.2424.1 0.76 -0.6 2,365,806 + Xcc-8004.2424.1 0.76 +0.0 2,365,807 - Xcc-8004.2424.1 0.76 +0.6 2,365,807 - Xcc-8004.2424.1 0.76 +0.2 2,365,807 - Xcc-8004.2424.1 0.76 +1.1 2,365,807 - Xcc-8004.2424.1 0.76 -0.1 2,365,807 - Xcc-8004.2424.1 0.76 +0.1 2,365,828 + Xcc-8004.2424.1 0.78 -0.1 2,365,828 + Xcc-8004.2424.1 0.78 -0.3 2,365,828 + Xcc-8004.2424.1 0.78 -0.7 2,365,829 - Xcc-8004.2424.1 0.78 -0.9 2,365,829 - Xcc-8004.2424.1 0.78 -1.4 2,365,833 + Xcc-8004.2424.1 0.78 -1.9 2,365,833 + Xcc-8004.2424.1 0.78 +0.4 2,365,834 - Xcc-8004.2424.1 0.78 -1.4 2,365,834 - Xcc-8004.2424.1 0.78 -0.9 2,366,243 + -1.1 2,366,243 + -1.6 2,366,243 + -0.2 2,366,243 + +0.1 2,366,244 - -0.7 2,366,244 - +0.1 2,366,290 + +0.6 2,366,290 + -0.9 2,366,290 + -0.3 2,366,290 + -1.6 2,366,290 + +0.1 2,366,290 + +0.6 2,366,290 + +2.6 2,366,290 + +1.1 2,366,290 + -1.6 2,366,290 + +0.3 2,366,290 + +0.3 2,366,290 + -3.0 2,366,291 - -2.6 2,366,291 - +0.8 2,366,291 - -1.3 2,366,291 - +1.1 2,366,291 - +0.1 2,366,291 - +0.5 2,366,291 - +0.2 2,366,291 - +0.5 2,366,291 - -0.2 2,366,291 - -1.9 2,366,306 + -0.8 2,366,307 - +3.2 2,366,307 - +0.8 2,366,333 - Xcc-8004.2425.1 0.18 -1.2 2,366,396 + Xcc-8004.2425.1 0.46 -0.2 2,366,396 + Xcc-8004.2425.1 0.46 +1.1 2,366,396 + Xcc-8004.2425.1 0.46 -2.1 2,366,396 + Xcc-8004.2425.1 0.46 +0.4 2,366,396 + Xcc-8004.2425.1 0.46 +2.0 2,366,396 + Xcc-8004.2425.1 0.46 +0.8 2,366,396 + Xcc-8004.2425.1 0.46 -0.7 2,366,397 - Xcc-8004.2425.1 0.46 -0.0 2,366,397 - Xcc-8004.2425.1 0.46 -0.2 2,366,397 - Xcc-8004.2425.1 0.46 -2.2 2,366,397 - Xcc-8004.2425.1 0.46 -1.3 2,366,397 - Xcc-8004.2425.1 0.46 +0.7 2,366,397 - Xcc-8004.2425.1 0.46 -1.4 2,366,397 - Xcc-8004.2425.1 0.46 +1.6 2,366,397 - Xcc-8004.2425.1 0.46 -0.2 2,366,397 - Xcc-8004.2425.1 0.46 +0.2 2,366,498 + +0.8 2,366,499 - -0.3 2,366,499 - +0.8 2,366,530 + +0.6 2,366,530 + -0.6 2,366,530 + +1.7 2,366,530 + +1.2 2,366,530 + -0.9 2,366,531 - -1.2 2,366,531 - -1.2 2,366,531 - +4.6 2,366,531 - -0.7 2,366,531 - -0.7 2,366,536 + +0.3 2,366,536 + -0.6 2,366,536 + -2.4 2,366,536 + +0.2 2,366,536 + -2.0 2,366,536 + -0.7 2,366,537 - -0.9 2,366,537 - -0.1 2,366,537 - +1.3 2,366,537 - -0.1 2,366,818 + +0.8 2,366,818 + -0.1 2,366,819 - -0.8 2,366,819 - -0.7 2,366,819 - -0.3 2,366,819 - -1.2 2,366,944 + Xcc-8004.2426.1 0.14 -0.5 2,366,944 + Xcc-8004.2426.1 0.14 -0.4 2,366,944 + Xcc-8004.2426.1 0.14 -0.3 2,366,944 + Xcc-8004.2426.1 0.14 -3.6 2,366,944 + Xcc-8004.2426.1 0.14 +1.3 2,366,945 - Xcc-8004.2426.1 0.14 +2.2 2,366,945 - Xcc-8004.2426.1 0.14 +1.3 2,366,945 - Xcc-8004.2426.1 0.14 -0.4 2,366,945 - Xcc-8004.2426.1 0.14 -0.2 2,366,945 - Xcc-8004.2426.1 0.14 +1.3 2,366,945 - Xcc-8004.2426.1 0.14 -1.0 2,366,945 - Xcc-8004.2426.1 0.14 -0.0 2,366,953 + Xcc-8004.2426.1 0.14 +1.0 2,366,953 + Xcc-8004.2426.1 0.14 -0.4 2,366,953 + Xcc-8004.2426.1 0.14 -0.6 2,366,954 - Xcc-8004.2426.1 0.14 -0.3 2,366,954 - Xcc-8004.2426.1 0.14 +0.9 2,367,067 + Xcc-8004.2426.1 0.19 +1.1 2,367,067 + Xcc-8004.2426.1 0.19 +1.9 2,367,067 + Xcc-8004.2426.1 0.19 +0.5 2,367,067 + Xcc-8004.2426.1 0.19 +0.6 2,367,068 - Xcc-8004.2426.1 0.19 +1.5 2,367,068 - Xcc-8004.2426.1 0.19 +0.4 2,367,068 - Xcc-8004.2426.1 0.19 +0.7 2,367,068 - Xcc-8004.2426.1 0.19 +2.0 2,367,068 - Xcc-8004.2426.1 0.19 -0.6 2,367,068 - Xcc-8004.2426.1 0.19 +0.0 2,367,068 - Xcc-8004.2426.1 0.19 -0.2 2,367,068 - Xcc-8004.2426.1 0.19 +1.1 2,367,177 + Xcc-8004.2426.1 0.23 +0.2 2,367,177 + Xcc-8004.2426.1 0.23 +2.2 2,367,178 - Xcc-8004.2426.1 0.23 +1.1 2,367,178 - Xcc-8004.2426.1 0.23 +1.2 2,367,248 - Xcc-8004.2426.1 0.26 -0.5 2,367,248 - Xcc-8004.2426.1 0.26 +0.0 2,367,257 - Xcc-8004.2426.1 0.27 -0.2 2,367,257 - Xcc-8004.2426.1 0.27 -2.1 2,367,257 - Xcc-8004.2426.1 0.27 -0.2 2,367,340 + Xcc-8004.2426.1 0.30 +1.9 2,367,340 + Xcc-8004.2426.1 0.30 -0.6 2,367,340 + Xcc-8004.2426.1 0.30 -2.1 2,367,341 - Xcc-8004.2426.1 0.30 +0.6 2,367,385 + Xcc-8004.2426.1 0.32 +1.5 2,367,386 - Xcc-8004.2426.1 0.32 +0.5 2,367,684 - Xcc-8004.2426.1 0.45 +0.2 2,367,701 - Xcc-8004.2426.1 0.46 -0.5 2,367,701 - Xcc-8004.2426.1 0.46 +0.8 2,367,701 - Xcc-8004.2426.1 0.46 -0.7 2,367,701 - Xcc-8004.2426.1 0.46 -0.2 2,367,798 + Xcc-8004.2426.1 0.50 +0.4 2,367,799 - Xcc-8004.2426.1 0.50 -0.2 2,367,799 - Xcc-8004.2426.1 0.50 +1.2 2,367,901 + Xcc-8004.2426.1 0.54 +3.4 2,367,901 + Xcc-8004.2426.1 0.54 +0.9 2,367,901 + Xcc-8004.2426.1 0.54 -2.4 2,367,902 - Xcc-8004.2426.1 0.54 +1.2 2,367,902 - Xcc-8004.2426.1 0.54 -0.0 2,367,902 - Xcc-8004.2426.1 0.54 +0.2 2,368,042 + Xcc-8004.2426.1 0.60 +0.4 2,368,042 + Xcc-8004.2426.1 0.60 +1.1 2,368,043 - Xcc-8004.2426.1 0.60 +1.6 2,368,043 - Xcc-8004.2426.1 0.60 +1.1 2,368,063 + Xcc-8004.2426.1 0.61 +0.2 2,368,064 - Xcc-8004.2426.1 0.61 -1.7 2,368,064 - Xcc-8004.2426.1 0.61 +1.3 2,368,123 + Xcc-8004.2426.1 0.63 +0.1 2,368,123 + Xcc-8004.2426.1 0.63 -0.5 2,368,123 + Xcc-8004.2426.1 0.63 +2.5 2,368,124 - Xcc-8004.2426.1 0.63 +1.2 2,368,124 - Xcc-8004.2426.1 0.63 -0.1 2,368,124 - Xcc-8004.2426.1 0.63 +0.9 2,368,124 - Xcc-8004.2426.1 0.63 +1.3 2,368,131 + Xcc-8004.2426.1 0.64 +0.8 2,368,176 + Xcc-8004.2426.1 0.66 +0.0 2,368,177 - Xcc-8004.2426.1 0.66 -0.3 2,368,177 - Xcc-8004.2426.1 0.66 +1.1 2,368,804 - +0.0 2,369,045 - +0.6 2,369,045 - +0.0 2,369,169 - +3.7 2,369,243 + +2.7 2,369,244 - +2.4 2,369,244 - +3.4 2,369,288 + +2.0 2,369,288 + +1.6 2,369,288 + +3.4 2,369,288 + +3.1 2,369,289 - +1.4 2,369,289 - +3.3 2,369,289 - +2.2 2,369,289 - +3.2 2,369,289 - +3.2 2,369,289 - +2.4 2,369,289 - +2.6 2,369,289 - +1.7 2,369,719 + Xcc-8004.2427.1 0.20 +2.7 2,369,720 - Xcc-8004.2427.1 0.20 +3.5
Or see this region's nucleotide sequence