Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.156.1 and Xcc-8004.157.1 are separated by 155 nucleotides Xcc-8004.157.1 and Xcc-8004.158.1 are separated by 286 nucleotides
Xcc-8004.156.1: Xcc-8004.156.1 - putative secreted protein, at 144,223 to 145,476
Xcc-8004.156.1
Xcc-8004.157.1: Xcc-8004.157.1 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 145,632 to 146,654
Xcc-8004.157.1
Xcc-8004.158.1: Xcc-8004.158.1 - N-acetylglucosamine-regulated TonB-dependent outer membrane receptor, at 146,941 to 149,709
Xcc-8004.158.1
Position (kb) 145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 144.704 kb on + strand, within Xcc-8004.156.1 at 144.704 kb on + strand, within Xcc-8004.156.1 at 145.250 kb on - strand, within Xcc-8004.156.1 at 145.250 kb on - strand, within Xcc-8004.156.1 at 145.406 kb on + strand at 145.406 kb on + strand at 145.407 kb on - strand at 145.407 kb on - strand at 145.407 kb on - strand at 145.407 kb on - strand at 145.423 kb on + strand at 145.424 kb on - strand at 145.424 kb on - strand at 145.424 kb on - strand at 145.424 kb on - strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.508 kb on + strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.509 kb on - strand at 145.512 kb on + strand at 145.512 kb on + strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.513 kb on - strand at 145.543 kb on + strand at 145.543 kb on + strand at 145.543 kb on + strand at 145.544 kb on - strand at 145.722 kb on + strand at 145.723 kb on - strand at 145.723 kb on - strand at 145.835 kb on + strand, within Xcc-8004.157.1 at 145.835 kb on + strand, within Xcc-8004.157.1 at 145.836 kb on - strand, within Xcc-8004.157.1 at 145.919 kb on + strand, within Xcc-8004.157.1 at 146.146 kb on + strand, within Xcc-8004.157.1 at 146.146 kb on + strand, within Xcc-8004.157.1 at 146.147 kb on - strand, within Xcc-8004.157.1 at 146.147 kb on - strand, within Xcc-8004.157.1 at 146.293 kb on + strand, within Xcc-8004.157.1 at 146.293 kb on + strand, within Xcc-8004.157.1 at 146.294 kb on - strand, within Xcc-8004.157.1 at 146.338 kb on + strand, within Xcc-8004.157.1 at 146.338 kb on + strand, within Xcc-8004.157.1 at 146.338 kb on + strand, within Xcc-8004.157.1 at 146.339 kb on - strand, within Xcc-8004.157.1 at 146.339 kb on - strand, within Xcc-8004.157.1 at 146.339 kb on - strand, within Xcc-8004.157.1 at 146.339 kb on - strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.383 kb on + strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.384 kb on - strand, within Xcc-8004.157.1 at 146.466 kb on + strand, within Xcc-8004.157.1 at 146.654 kb on + strand at 146.655 kb on - strand at 146.663 kb on + strand at 146.663 kb on + strand at 146.663 kb on + strand at 146.664 kb on - strand at 146.664 kb on - strand at 146.664 kb on - strand at 146.664 kb on - strand at 146.664 kb on - strand at 146.860 kb on - strand at 146.860 kb on - strand at 147.499 kb on + strand, within Xcc-8004.158.1 at 147.499 kb on + strand, within Xcc-8004.158.1 at 147.499 kb on + strand, within Xcc-8004.158.1 at 147.500 kb on - strand, within Xcc-8004.158.1 at 147.500 kb on - strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.634 kb on + strand, within Xcc-8004.158.1 at 147.635 kb on - strand, within Xcc-8004.158.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 144,704 + Xcc-8004.156.1 0.38 +0.6 144,704 + Xcc-8004.156.1 0.38 -1.2 145,250 - Xcc-8004.156.1 0.82 -0.4 145,250 - Xcc-8004.156.1 0.82 +0.6 145,406 + -1.3 145,406 + +1.0 145,407 - -0.0 145,407 - +1.7 145,407 - -1.3 145,407 - -1.3 145,423 + -0.3 145,424 - +3.7 145,424 - -0.6 145,424 - +0.4 145,424 - -1.2 145,508 + -0.6 145,508 + +0.4 145,508 + +1.2 145,508 + +0.8 145,508 + -0.6 145,508 + +0.1 145,508 + +1.4 145,508 + +0.9 145,508 + -1.7 145,508 + -0.1 145,508 + -0.9 145,508 + +0.5 145,508 + -1.8 145,508 + +0.7 145,509 - +1.4 145,509 - +0.1 145,509 - -0.7 145,509 - +0.6 145,509 - -0.5 145,509 - +0.1 145,509 - +0.8 145,509 - -0.3 145,509 - -2.9 145,509 - +0.3 145,509 - -0.1 145,509 - -1.5 145,509 - -0.9 145,509 - +2.1 145,509 - +1.4 145,512 + -1.4 145,512 + +0.7 145,513 - -1.2 145,513 - +1.1 145,513 - +0.1 145,513 - -0.5 145,513 - -1.4 145,513 - +0.7 145,513 - -1.9 145,513 - -1.1 145,543 + -0.9 145,543 + -0.9 145,543 + -0.6 145,544 - -2.1 145,722 + -0.2 145,723 - +5.6 145,723 - +0.1 145,835 + Xcc-8004.157.1 0.20 +0.4 145,835 + Xcc-8004.157.1 0.20 -0.7 145,836 - Xcc-8004.157.1 0.20 -0.3 145,919 + Xcc-8004.157.1 0.28 +2.4 146,146 + Xcc-8004.157.1 0.50 -1.1 146,146 + Xcc-8004.157.1 0.50 +1.1 146,147 - Xcc-8004.157.1 0.50 -1.8 146,147 - Xcc-8004.157.1 0.50 +0.6 146,293 + Xcc-8004.157.1 0.65 +0.7 146,293 + Xcc-8004.157.1 0.65 -1.0 146,294 - Xcc-8004.157.1 0.65 -2.6 146,338 + Xcc-8004.157.1 0.69 -0.7 146,338 + Xcc-8004.157.1 0.69 -1.2 146,338 + Xcc-8004.157.1 0.69 +0.5 146,339 - Xcc-8004.157.1 0.69 -0.8 146,339 - Xcc-8004.157.1 0.69 -1.2 146,339 - Xcc-8004.157.1 0.69 -1.3 146,339 - Xcc-8004.157.1 0.69 +0.9 146,383 + Xcc-8004.157.1 0.73 +1.4 146,383 + Xcc-8004.157.1 0.73 -1.4 146,383 + Xcc-8004.157.1 0.73 +0.2 146,383 + Xcc-8004.157.1 0.73 -0.2 146,383 + Xcc-8004.157.1 0.73 -0.6 146,383 + Xcc-8004.157.1 0.73 +0.7 146,383 + Xcc-8004.157.1 0.73 -0.9 146,383 + Xcc-8004.157.1 0.73 -0.8 146,383 + Xcc-8004.157.1 0.73 +0.3 146,383 + Xcc-8004.157.1 0.73 +0.1 146,383 + Xcc-8004.157.1 0.73 -0.7 146,383 + Xcc-8004.157.1 0.73 -0.1 146,384 - Xcc-8004.157.1 0.74 +1.1 146,384 - Xcc-8004.157.1 0.74 -1.6 146,384 - Xcc-8004.157.1 0.74 +0.5 146,384 - Xcc-8004.157.1 0.74 -0.6 146,384 - Xcc-8004.157.1 0.74 +0.2 146,384 - Xcc-8004.157.1 0.74 +0.3 146,466 + Xcc-8004.157.1 0.82 +0.3 146,654 + -0.4 146,655 - -0.4 146,663 + +0.6 146,663 + +0.8 146,663 + -1.1 146,664 - -0.2 146,664 - +1.4 146,664 - -0.3 146,664 - +0.2 146,664 - -1.1 146,860 - +1.1 146,860 - -0.2 147,499 + Xcc-8004.158.1 0.20 -0.6 147,499 + Xcc-8004.158.1 0.20 -1.1 147,499 + Xcc-8004.158.1 0.20 +0.0 147,500 - Xcc-8004.158.1 0.20 +1.4 147,500 - Xcc-8004.158.1 0.20 -0.7 147,634 + Xcc-8004.158.1 0.25 +0.8 147,634 + Xcc-8004.158.1 0.25 +1.4 147,634 + Xcc-8004.158.1 0.25 -0.5 147,634 + Xcc-8004.158.1 0.25 +0.4 147,634 + Xcc-8004.158.1 0.25 -1.6 147,635 - Xcc-8004.158.1 0.25 +0.7
Or see this region's nucleotide sequence