Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00470

Experiment: H2 N-free with 10mM D-glucosamine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00465 and MMP_RS00470 are separated by 20 nucleotidesMMP_RS00470 and MMP_RS00475 are separated by 32 nucleotides MMP_RS00465: MMP_RS00465 - alpha-hydroxy-acid oxidizing protein, at 91,628 to 93,160 _RS00465 MMP_RS00470: MMP_RS00470 - hypothetical protein, at 93,181 to 93,951 _RS00470 MMP_RS00475: MMP_RS00475 - Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain, at 93,984 to 95,063 _RS00475 Position (kb) 93 94Strain fitness (log2 ratio) -2 -1 0 1at 92.782 kb on + strandat 93.954 kb on + strandat 93.973 kb on + strandat 93.973 kb on + strandat 94.078 kb on - strandat 94.080 kb on - strandat 94.130 kb on - strand, within MMP_RS00475at 94.131 kb on + strand, within MMP_RS00475at 94.134 kb on + strand, within MMP_RS00475at 94.218 kb on - strand, within MMP_RS00475at 94.219 kb on + strand, within MMP_RS00475at 94.413 kb on + strand, within MMP_RS00475at 94.485 kb on - strand, within MMP_RS00475at 94.720 kb on - strand, within MMP_RS00475at 94.824 kb on - strand, within MMP_RS00475at 94.824 kb on - strand, within MMP_RS00475at 94.824 kb on - strand, within MMP_RS00475at 94.825 kb on + strand, within MMP_RS00475at 94.877 kb on - strand, within MMP_RS00475at 94.877 kb on - strand, within MMP_RS00475at 94.928 kb on + strand, within MMP_RS00475

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM D-glucosamine
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92,782 + -1.9
93,954 + +0.1
93,973 + +0.5
93,973 + -0.3
94,078 - +0.0
94,080 - -0.5
94,130 - MMP_RS00475 0.14 +0.8
94,131 + MMP_RS00475 0.14 +0.6
94,134 + MMP_RS00475 0.14 -0.3
94,218 - MMP_RS00475 0.22 +0.2
94,219 + MMP_RS00475 0.22 +0.5
94,413 + MMP_RS00475 0.40 +0.5
94,485 - MMP_RS00475 0.46 +0.6
94,720 - MMP_RS00475 0.68 -0.3
94,824 - MMP_RS00475 0.78 -0.1
94,824 - MMP_RS00475 0.78 -0.0
94,824 - MMP_RS00475 0.78 +0.4
94,825 + MMP_RS00475 0.78 +0.7
94,877 - MMP_RS00475 0.83 -0.6
94,877 - MMP_RS00475 0.83 +0.5
94,928 + MMP_RS00475 0.87 -0.3

Or see this region's nucleotide sequence