Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07600

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07590 and PGA1_c07600 are separated by 62 nucleotidesPGA1_c07600 and PGA1_c07610 are separated by 144 nucleotides PGA1_c07590: PGA1_c07590 - aerotaxis receptor-like protein, at 784,790 to 786,010 _c07590 PGA1_c07600: PGA1_c07600 - transcriptional regulator, AsnC / lrp family, at 786,073 to 786,528 _c07600 PGA1_c07610: PGA1_c07610 - 4-hydroxyphenylpyruvate dioxygenase Hpd, at 786,673 to 787,773 _c07610 Position (kb) 786 787Strain fitness (log2 ratio) -2 -1 0 1at 785.118 kb on - strand, within PGA1_c07590at 785.160 kb on - strand, within PGA1_c07590at 785.168 kb on - strand, within PGA1_c07590at 785.408 kb on - strand, within PGA1_c07590at 785.425 kb on - strand, within PGA1_c07590at 785.432 kb on - strand, within PGA1_c07590at 785.452 kb on - strand, within PGA1_c07590at 785.452 kb on - strand, within PGA1_c07590at 785.452 kb on - strand, within PGA1_c07590at 785.488 kb on + strand, within PGA1_c07590at 785.555 kb on - strand, within PGA1_c07590at 785.573 kb on + strand, within PGA1_c07590at 785.580 kb on + strand, within PGA1_c07590at 785.626 kb on + strand, within PGA1_c07590at 785.634 kb on - strand, within PGA1_c07590at 785.658 kb on + strand, within PGA1_c07590at 785.688 kb on + strand, within PGA1_c07590at 785.706 kb on + strand, within PGA1_c07590at 785.714 kb on - strand, within PGA1_c07590at 785.714 kb on - strand, within PGA1_c07590at 785.741 kb on + strand, within PGA1_c07590at 785.757 kb on + strand, within PGA1_c07590at 785.757 kb on + strand, within PGA1_c07590at 785.765 kb on - strand, within PGA1_c07590at 785.805 kb on + strand, within PGA1_c07590at 785.805 kb on + strand, within PGA1_c07590at 785.805 kb on + strand, within PGA1_c07590at 785.805 kb on + strand, within PGA1_c07590at 785.813 kb on - strand, within PGA1_c07590at 785.813 kb on - strand, within PGA1_c07590at 785.813 kb on - strand, within PGA1_c07590at 785.813 kb on - strand, within PGA1_c07590at 785.870 kb on + strand, within PGA1_c07590at 785.911 kb on + strandat 786.025 kb on + strandat 786.025 kb on + strandat 786.025 kb on + strandat 786.038 kb on - strandat 786.041 kb on + strandat 786.049 kb on - strandat 786.051 kb on + strandat 786.051 kb on + strandat 786.059 kb on - strandat 786.061 kb on - strandat 786.078 kb on - strandat 786.189 kb on + strand, within PGA1_c07600at 786.194 kb on + strand, within PGA1_c07600at 786.197 kb on - strand, within PGA1_c07600at 786.202 kb on - strand, within PGA1_c07600at 786.202 kb on - strand, within PGA1_c07600at 786.202 kb on - strand, within PGA1_c07600at 786.231 kb on + strand, within PGA1_c07600at 786.231 kb on + strand, within PGA1_c07600at 786.235 kb on + strand, within PGA1_c07600at 786.241 kb on + strand, within PGA1_c07600at 786.262 kb on + strand, within PGA1_c07600at 786.270 kb on - strand, within PGA1_c07600at 786.270 kb on - strand, within PGA1_c07600at 786.319 kb on + strand, within PGA1_c07600at 786.324 kb on + strand, within PGA1_c07600at 786.324 kb on + strand, within PGA1_c07600at 786.324 kb on + strand, within PGA1_c07600at 786.327 kb on - strand, within PGA1_c07600at 786.327 kb on - strand, within PGA1_c07600at 786.331 kb on + strand, within PGA1_c07600at 786.332 kb on - strand, within PGA1_c07600at 786.339 kb on - strand, within PGA1_c07600at 786.339 kb on - strand, within PGA1_c07600at 786.359 kb on + strand, within PGA1_c07600at 786.379 kb on + strand, within PGA1_c07600at 786.393 kb on - strand, within PGA1_c07600at 786.434 kb on + strand, within PGA1_c07600at 786.442 kb on + strand, within PGA1_c07600at 786.442 kb on + strand, within PGA1_c07600at 786.442 kb on + strand, within PGA1_c07600at 786.442 kb on - strand, within PGA1_c07600at 786.442 kb on - strand, within PGA1_c07600at 786.450 kb on - strand, within PGA1_c07600at 786.450 kb on - strand, within PGA1_c07600at 786.515 kb on + strandat 786.527 kb on - strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.576 kb on + strandat 786.584 kb on - strandat 786.584 kb on - strandat 786.584 kb on - strandat 786.584 kb on - strandat 786.586 kb on + strandat 786.586 kb on + strandat 786.586 kb on + strandat 786.594 kb on - strandat 786.594 kb on - strandat 786.648 kb on - strandat 786.665 kb on - strandat 786.677 kb on + strandat 786.679 kb on - strandat 786.679 kb on - strandat 786.679 kb on - strandat 786.704 kb on - strandat 786.739 kb on - strandat 786.741 kb on + strandat 786.773 kb on + strandat 786.781 kb on - strandat 786.806 kb on + strand, within PGA1_c07610at 786.809 kb on - strand, within PGA1_c07610at 787.037 kb on - strand, within PGA1_c07610at 787.102 kb on - strand, within PGA1_c07610at 787.127 kb on + strand, within PGA1_c07610at 787.127 kb on + strand, within PGA1_c07610at 787.136 kb on + strand, within PGA1_c07610at 787.136 kb on + strand, within PGA1_c07610at 787.136 kb on + strand, within PGA1_c07610at 787.136 kb on + strand, within PGA1_c07610at 787.144 kb on - strand, within PGA1_c07610at 787.144 kb on - strand, within PGA1_c07610at 787.151 kb on + strand, within PGA1_c07610at 787.151 kb on + strand, within PGA1_c07610at 787.151 kb on + strand, within PGA1_c07610at 787.165 kb on - strand, within PGA1_c07610at 787.174 kb on + strand, within PGA1_c07610at 787.182 kb on - strand, within PGA1_c07610at 787.182 kb on - strand, within PGA1_c07610at 787.189 kb on - strand, within PGA1_c07610at 787.293 kb on + strand, within PGA1_c07610at 787.296 kb on - strand, within PGA1_c07610at 787.303 kb on - strand, within PGA1_c07610at 787.303 kb on - strand, within PGA1_c07610at 787.313 kb on - strand, within PGA1_c07610at 787.365 kb on + strand, within PGA1_c07610at 787.400 kb on + strand, within PGA1_c07610at 787.496 kb on + strand, within PGA1_c07610at 787.504 kb on - strand, within PGA1_c07610at 787.507 kb on - strand, within PGA1_c07610at 787.510 kb on + strand, within PGA1_c07610at 787.518 kb on - strand, within PGA1_c07610

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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785,118 - PGA1_c07590 0.27 +0.3
785,160 - PGA1_c07590 0.30 +0.4
785,168 - PGA1_c07590 0.31 +1.2
785,408 - PGA1_c07590 0.51 -0.3
785,425 - PGA1_c07590 0.52 +0.2
785,432 - PGA1_c07590 0.53 -0.1
785,452 - PGA1_c07590 0.54 +0.3
785,452 - PGA1_c07590 0.54 +0.3
785,452 - PGA1_c07590 0.54 -0.9
785,488 + PGA1_c07590 0.57 -1.6
785,555 - PGA1_c07590 0.63 -0.6
785,573 + PGA1_c07590 0.64 -0.6
785,580 + PGA1_c07590 0.65 +0.2
785,626 + PGA1_c07590 0.68 -0.3
785,634 - PGA1_c07590 0.69 -0.3
785,658 + PGA1_c07590 0.71 +0.3
785,688 + PGA1_c07590 0.74 +0.1
785,706 + PGA1_c07590 0.75 -1.3
785,714 - PGA1_c07590 0.76 -0.2
785,714 - PGA1_c07590 0.76 -0.2
785,741 + PGA1_c07590 0.78 -0.7
785,757 + PGA1_c07590 0.79 -0.9
785,757 + PGA1_c07590 0.79 +0.7
785,765 - PGA1_c07590 0.80 +1.6
785,805 + PGA1_c07590 0.83 -0.2
785,805 + PGA1_c07590 0.83 -0.3
785,805 + PGA1_c07590 0.83 +0.7
785,805 + PGA1_c07590 0.83 -0.4
785,813 - PGA1_c07590 0.84 +0.7
785,813 - PGA1_c07590 0.84 -0.1
785,813 - PGA1_c07590 0.84 -1.4
785,813 - PGA1_c07590 0.84 -0.1
785,870 + PGA1_c07590 0.88 -0.1
785,911 + +0.1
786,025 + -0.2
786,025 + +0.8
786,025 + -0.1
786,038 - -0.1
786,041 + +0.8
786,049 - -0.5
786,051 + -1.1
786,051 + -0.3
786,059 - -0.3
786,061 - +0.3
786,078 - -0.7
786,189 + PGA1_c07600 0.25 +0.9
786,194 + PGA1_c07600 0.27 +1.0
786,197 - PGA1_c07600 0.27 +0.2
786,202 - PGA1_c07600 0.28 +0.8
786,202 - PGA1_c07600 0.28 +0.5
786,202 - PGA1_c07600 0.28 +0.7
786,231 + PGA1_c07600 0.35 -0.8
786,231 + PGA1_c07600 0.35 +1.3
786,235 + PGA1_c07600 0.36 -0.3
786,241 + PGA1_c07600 0.37 +0.4
786,262 + PGA1_c07600 0.41 +0.5
786,270 - PGA1_c07600 0.43 -1.1
786,270 - PGA1_c07600 0.43 -0.1
786,319 + PGA1_c07600 0.54 -0.0
786,324 + PGA1_c07600 0.55 -0.1
786,324 + PGA1_c07600 0.55 +0.5
786,324 + PGA1_c07600 0.55 +0.3
786,327 - PGA1_c07600 0.56 +0.1
786,327 - PGA1_c07600 0.56 +0.5
786,331 + PGA1_c07600 0.57 +0.2
786,332 - PGA1_c07600 0.57 +0.4
786,339 - PGA1_c07600 0.58 -0.1
786,339 - PGA1_c07600 0.58 -0.3
786,359 + PGA1_c07600 0.63 -0.5
786,379 + PGA1_c07600 0.67 +0.8
786,393 - PGA1_c07600 0.70 -0.9
786,434 + PGA1_c07600 0.79 -0.2
786,442 + PGA1_c07600 0.81 -1.0
786,442 + PGA1_c07600 0.81 -0.0
786,442 + PGA1_c07600 0.81 +0.9
786,442 - PGA1_c07600 0.81 +0.4
786,442 - PGA1_c07600 0.81 +1.3
786,450 - PGA1_c07600 0.83 -0.1
786,450 - PGA1_c07600 0.83 -0.4
786,515 + +0.7
786,527 - +0.6
786,576 + +0.4
786,576 + -0.7
786,576 + -0.6
786,576 + -0.4
786,576 + +1.5
786,576 + +0.7
786,576 + +0.2
786,576 + +0.8
786,576 + +0.7
786,576 + +0.5
786,576 + -0.1
786,576 + +0.5
786,576 + +0.2
786,584 - -0.8
786,584 - -1.4
786,584 - -0.4
786,584 - -0.3
786,586 + +0.7
786,586 + +0.6
786,586 + +0.1
786,594 - +0.3
786,594 - +0.7
786,648 - +0.9
786,665 - +0.2
786,677 + +0.7
786,679 - -0.7
786,679 - +0.9
786,679 - +0.0
786,704 - +1.7
786,739 - -0.1
786,741 + -0.3
786,773 + +0.7
786,781 - +0.3
786,806 + PGA1_c07610 0.12 -0.8
786,809 - PGA1_c07610 0.12 +0.3
787,037 - PGA1_c07610 0.33 +0.2
787,102 - PGA1_c07610 0.39 +0.2
787,127 + PGA1_c07610 0.41 +0.7
787,127 + PGA1_c07610 0.41 -0.5
787,136 + PGA1_c07610 0.42 -0.0
787,136 + PGA1_c07610 0.42 -1.0
787,136 + PGA1_c07610 0.42 +0.5
787,136 + PGA1_c07610 0.42 +0.1
787,144 - PGA1_c07610 0.43 +0.5
787,144 - PGA1_c07610 0.43 -2.6
787,151 + PGA1_c07610 0.43 +0.3
787,151 + PGA1_c07610 0.43 +0.1
787,151 + PGA1_c07610 0.43 +0.3
787,165 - PGA1_c07610 0.45 +0.6
787,174 + PGA1_c07610 0.46 +0.1
787,182 - PGA1_c07610 0.46 -0.0
787,182 - PGA1_c07610 0.46 +0.6
787,189 - PGA1_c07610 0.47 +0.0
787,293 + PGA1_c07610 0.56 -0.1
787,296 - PGA1_c07610 0.57 -0.1
787,303 - PGA1_c07610 0.57 +0.2
787,303 - PGA1_c07610 0.57 +0.0
787,313 - PGA1_c07610 0.58 -1.4
787,365 + PGA1_c07610 0.63 +0.4
787,400 + PGA1_c07610 0.66 +1.0
787,496 + PGA1_c07610 0.75 +0.2
787,504 - PGA1_c07610 0.75 -0.3
787,507 - PGA1_c07610 0.76 -0.6
787,510 + PGA1_c07610 0.76 -0.5
787,518 - PGA1_c07610 0.77 +0.3

Or see this region's nucleotide sequence